SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene190965

Length: 210 nt

UniGene Fasta

>sp_v3.0_unigene190965
ATTTAGGTGTGCCGGAGGAATCGGTGCCGAATTTGTTATATGTTTATAATTCTTTGAGGTCTTTCAGTAGACTGTTGTTTTTGAGCCCGTTCGGGCTTAATGATTTCGTTGGGGCATTGAACTGCAAGTCTGCTAATTCTTTACTGGATGCCGTGCATGTTAAGCTTCTGCAAGCATTGAGGAGACATCTTTATTCTATTTCCCGAGAAG

Ace file of the UniGene sp_v3.0_unigene190965

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gb\|AAC80581.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FNI5_ARATH	-	-	2.0e-10	52%
FL-Next	tr=Hypothetical_protein; Oryza glaberrima (African rice).	-	-	0.0	63%

Source	Gene names
Sma3	At5g35210; GSVIVT00022100001; GSVIVT00022235001; LOC_Os11g05130; OsI_35107; OsJ_32971; RCOM_1186110; VITISV_022739;

Source	GOs	Term	Type	Identity
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	metalloendopeptidase activity	GO:0004222	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	DDT domain	IPR004022	-	-
Sma3	Peptidase M50	IPR008915	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	DDT domain, subgroup	IPR018500	-	-
Sma3	DDT domain superfamily	IPR018501	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G22760.1	PHD finger family protein chr5:7571635-7577662 FORWARD LENGTH=1566	1.0e-14	60%
RefSeq	Arabidopsis thaliana	NP_197668.2	PHD finger family protein [Arabidopsis thaliana]	2.0e-14	60%
RefSeq	Populus trichocarpa	XP_002313643.1	predicted protein [Populus trichocarpa]	5.0e-11	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: G2XMU5

Fln msg: Distance to subject end: 21 aas, your sequence is shorter than subject: 69 - 415

Fln protein: LGVPEESVPNLLYVYNSLRSFSRLLFLSPFGLNDFVGALNCKSANSLLDAVHVKLLQALRRHLYSISRE

Protein Length: 70

Fln nts: ATTTAGGTGTGCCGGAGGAATCGGTGCCGAATTTGTTATATGTTTATAATTCTTTGAGGTCTTTCAGTAGACTGTTGTTTTTGAGCCCGTTCGGGCTTAATGATTTCGTTGGGGCATTGAACTGCAAGTCTGCTAATTCTTTACTGGATGCCGTGCATGTTAAGCTTCTGCAAGCATTGAGGAGACATCTTTATTCTATTTCCCGAGAAG

Fln Alignment:

AllPine_b_c28922___LGVPEESVPNLLYVYNXXXXXXXXXXXXPFGLNDFVGALNCKSANSLLDAVHVKLLQALRRHLYSISRE
G2XMU5________________IAVPEEAISYLFSVYNFLRSFSVQLFLSPFGLDDFVSSVNCTTQNTLLDAVHVSLLRALRRHLETKSSE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain