SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene190943

Length: 231 nt

UniGene Fasta

>sp_v3.0_unigene190943
ATATAGCGGAAATTGATGCGAGCTTGTTTAGCCTAACAATGGCTTCTGGAAAGTCTTTCTTGGACTGGTACTGCAGACCCGAGGCGAACAGCGCCTGGACAACCCTCGCACAAAGTGCCTTAGGCGCTTACACGCCCTGCGCCACTGAAACGGTGGTGGTTTCTGTGTCGAATTTGTTTCTCTGGTGCTTACTTTGTTACAGGATTTATCTCATCCGGAAGGTTTTCAAGG

Ace file of the UniGene sp_v3.0_unigene190943

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Multidrug resistance protein ABC transporter family n=1 Tax=Populus trichocarpa RepID=B9I191_POPTR	-	-	6.0e-12	54%
FL-Next	sp=ABC transporter C family member 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	47%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G34660.1	ATMRP2, EST4, MRP2, ABCC2, AtABCC2 multidrug resistance-associated protein 2 chr2:14603267-14612387 FORWARD LENGTH=1623	8.0e-14	47%
RefSeq	Arabidopsis thaliana	NP_001189675.1	ABC transporter C family member 2 [Arabidopsis thaliana]	1.0e-13	47%
RefSeq	Populus trichocarpa	XP_002317351.1	multidrug resistance protein ABC transporter family [Populus trichocarpa]	4.0e-16	54%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q42093

Fln msg: Distance to subject end: 1561 aas, your sequence is shorter than subject: 64 - 1623

Fln protein: MASGKSFLDWYCRPEANSAWTTLAQSALGAYTPCATETVVVSVSNLFLWCLLCYRIYLIRKVFK

Protein Length: 65

Fln nts: ATATAGCGGAAATTGATGCGAGCTTGTTTAGCCTAACA_-_ATGGCTTCTGGAAAGTCTTTCTTGGACTGGTACTGCAGACCCGAGGCGAACAGCGCCTGGACAACCCTCGCACAAAGTGCCTTAGGCGCTTACACGCCCTGCGCCACTGAAACGGTGGTGGTTTCTGTGTCGAATTTGTTTCTCTGGTGCTTACTTTGTTACAGGATTTATCTCATCCGGAAGGTTTTCAAGG

Fln Alignment:

AllPine_b_c28870___GKSFLDWYCRPEANSAWTTLAQSALGAYTPCATETVVVSVSNLFLWCLLCYRIYLIRKVFK
Q42093________________GFEFIEWYCKPVPNGVWTKQVANAFGAYTPCATDSFVLGISQLVLLVLCLYRIWLALKDHK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain