SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene190767

Length: 453 nt

UniGene Fasta

>sp_v3.0_unigene190767
GCTGCTAATGATGTTCAATTGGAGTTTAGAATGATTGACCCATACGTCAGAATTACTTTGAAGCACGACAACAAGGGAGTTTTCTCTACCACCTTCAAAGTTCCTGATGTGTATGGAATCTTCACCTTCAAGAGCGAGTACAACAGAAAGGGATATGGATCTTTCACCTCTATTACTCGTACTCCAGTGAGACCATTTAGACATACTCAATACGAAAGATTTATTGATGCTGCTTATCCATATTACGCAAGTGCTTTCTCTATGATGGCTGGTTTGTTCGTCTTCAGTTGGGTGTTCCTTTACAACAAGGAGAAGTAATGGACGCGCGGAAAATAGAGAACAATAACACAATCAATATTCATAAACACCGCGCAGGAGCTGGACTCCATGTACATTATCACCGAGCTAATTCCGTTTTTGGACGTTTGGAAGATGAAATAAACAGCTGTCTGC

Ace file of the UniGene sp_v3.0_unigene190767

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dolichyl-di-phosphooligosaccharide-protein glycotransferase, isoform CRA_a [Mus musculus]	-	-	3.0e-30	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative	-	-	1.902e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Dolichyl-diphosphooligosaccharide--protein glycotransferase.	EC:2.4.1.119	-	1.731e-07	-

Source	KEGGs	Term	e value	Identity
Sma3	N-Glycan biosynthesis	00510	1.731e-07	%
Sma3	Various types of N-glycan biosynthesis	00513	1.731e-07	%
Sma3	Metabolic pathways	01100	1.731e-07	%

Source	Gene names
Sma3	At5g66680; CHLREDRAFT_121156; GSVIVT00024999001; GSVIVT00036430001; GTR26; OJ1136_A05.21; Os07g0209000; OsI_25342; OsJ_23522; PHYPADRAFT_234790; POPTRDRAFT_593975; POPTRDRAFT_820006; RCOM_0553160; RCOM_0937690;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0004579	Molecular Function	-
Sma3	protein N-linked glycosylation via asparagine	GO:0018279	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligosaccharyl transferase complex, subunit Wbp1	IPR005013	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G66680.1	DGL1 dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein chr5:26617840-26620581 REVERSE LENGTH=437	4.0e-37	58%
RefSeq	Arabidopsis thaliana	NP_569038.1	oligosaccharyltransferase complex subunit beta [Arabidopsis thaliana]	5.0e-37	58%
RefSeq	Populus trichocarpa	XP_002310786.1	predicted protein [Populus trichocarpa]	4.0e-39	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUT4

Fln msg: your sequence is shorter than subject: 106 - 437

Fln protein: AANDVQLEFRMIDPYVRITLKHDNKGVFSTTFKVPDVYGIFTFKSEYNRKGYGSFTSITRTPVRPFRHTQYERFIDAAYPYYASAFSMMAGLFVFSWVFLYNKEK*

Protein Length: 107

Fln nts: GCTGCTAATGATGTTCAATTGGAGTTTAGAATGATTGACCCATACGTCAGAATTACTTTGAAGCACGACAACAAGGGAGTTTTCTCTACCACCTTCAAAGTTCCTGATGTGTATGGAATCTTCACCTTCAAGAGCGAGTACAACAGAAAGGGATATGGATCTTTCACCTCTATTACTCGTACTCCAGTGAGACCATTTAGACATACTCAATACGAAAGATTTATTGATGCTGCTTATCCATATTACGCAAGTGCTTTCTCTATGATGGCTGGTTTGTTCGTCTTCAGTTGGGTGTTCCTTTACAACAAGGAGAAGTAA___TGGACGCGCGGAAAATAGAGAACAATAACACAATCAATATTCATAAACACCGCGCAGGAGCTGGACTCCATGTACATTATCACCGAGCTAATTCCGTTTTTGGACGTTTGGAAGATGAAATAAACAGCTGTCTGC

Fln Alignment:

AllPine_b_c28620___ANDVQLEFRMIDPYVRITLKHDNKGVFSTTFKVPDVYGIFTFKSEYNRKGYGSFTSITRTPVRPFRHTQYERFIDAAYPYYASAFSMMAGLFVFSWVFLYNK
A9NUT4________________ADDVQVQFYMMSPYVLKTLSHDNKGLYSVSFQVPDVYGVFQFKIEYQRVGYTSLSLSKQIPVRPFRHNEYERFIKAAYPYYGGTFSMMTGFFIFGLFFLYHK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain