SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene190719

Length: 237 nt

UniGene Fasta

>sp_v3.0_unigene190719
TTGTAGGGGTGAACTCCAAGTCTACAATGGAGCCCTGCGATGGGCATGCCACTTGCTCCTCACTACTCTTATACCGCCTCCCCACGGACCTGGAACTGTCGGAGGTGGCCTCGCGTTTCCAGGTGGACCCAGTGGCACTCCTGGGAGCCAATGCCTTCGACATGTCCTACTCGGACGCAGAGATCAGATCATTCCTGCAAATTACATGCTCCGAATCCCCACATTATGCCAGTGCGT

Ace file of the UniGene sp_v3.0_unigene190719

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LysM domain GPI-anchored protein 1, putative n=1 Tax=Ricinus communis RepID=B9RJ77_RICCO	-	-	3.0e-13	60%
FL-Next	Isoform 2 of LysM domain-containing GPI-anchored protein 1 OS=Arabidopsis thaliana GN=At1g21880	-	-	0.0	54%

Source	Gene names
Sma3	At1g21880; POPTRDRAFT_209872; POPTRDRAFT_643636; POPTRDRAFT_651402; RCOM_1032080; T26F17.10; T26F17_5;

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G21880.2	LYM1 lysm domain GPI-anchored protein 1 precursor chr1:7680689-7682526 FORWARD LENGTH=416	2.0e-16	54%
RefSeq	Arabidopsis thaliana	NP_849697.1	LysM domain-containing GPI-anchored protein 1 [Arabidopsis thaliana]	1.0e-16	54%
RefSeq	Populus trichocarpa	XP_002307430.1	predicted protein [Populus trichocarpa]	1.0e-17	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q93ZH0-2

Fln msg: Distance to subject end: 209 aas, your sequence is shorter than subject: 78 - 316

Fln protein: VGVNSKSTMEPCDGHATCSSLLLYRLPTDLELSEVASRFQVDPVALLGANAFDMSYSDAEIRSFLQITCSESPHYASA

Protein Length: 79

Fln nts: TTGTAGGGGTGAACTCCAAGTCTACAATGGAGCCCTGCGATGGGCATGCCACTTGCTCCTCACTACTCTTATACCGCCTCCCCACGGACCTGGAACTGTCGGAGGTGGCCTCGCGTTTCCAGGTGGACCCAGTGGCACTCCTGGGAGCCAATGCCTTCGACATGTCCTACTCGGACGCAGAGATCAGATCATTCCTGCAAATTACATGCTCCGAATCCCCACATTATGCCAGTGCGT

Fln Alignment:

AllPine_b_c28554___SKSTMEPCDGHATCSSLLLYRLPTDLELSEVASRFQVDPVALLGANAFDMSYSDAE-----IRSFLQ--ITCS
Q93ZH0-2______________AKSTIEPCSSNDTCNALLGYTLYTDLKVSEVASLFQVDPISILLANAIDISYPDVENHILPSKLFLKIPITCS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain