SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene190476

Length: 483 nt

UniGene Fasta

>sp_v3.0_unigene190476
ATTGTTCTCCGCGCTTCCGTGAGACCTACAGACATGGCTTTCTCTCAGTCGATGGTCGAGAACTTCAAGGAGGCCTTCGCCCTCTTCGACAAGAAGGGTCACGGTGTCATCGACGTTGCCTCGCTCGGCCTCGTCATGCGCGCCATTGGTCTCGAGCCTAGTGATGCTGAGCTCCACAACATGATTACTGAGGTCGACGGCTCTGGCAAGGGCGCTGTTGACTTTGCCGAGTTCATGAAGATGATGGCCAAGAACGGCCCCACCACCGCCAACGAGATCAAGGAGACCTTCACCATCTTCAATGCATCGGGCAGTGGCTCCATCTCAAAAGCTGAGCTCAAGGCCATCATGCAGCGCTTTGGCGAGAACATCACAGACCAGGAGGTTGAGGATATGATGAAGGTCGCCGACCCCAACGGCACGGGCTCCGTCAGCTTCGCCGACTTCGAGCCGTCATTCTCGATGATTAAGCCGTCTCAACTC

Ace file of the UniGene sp_v3.0_unigene190476

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to calmodulin [Ornithorhynchus anatinus]	-	-	6.0e-31	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Sma3	Calmodulin	-	-	7.64e-13	-

Source	Gene names
Sma3	At1g66410; At5g37780; CALPI; CAM; CAM1; CAM4; CHLREDRAFT_9509; CMD1; CaM1; F28G11.13; FAP272; K22F20.2; MICPUN_104708; OSTLU_39965; PHATRDRAFT_23794; PHYPADRAFT_161424; SMCaM1; T27F4.1; T31G3.3; cam; cam1;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Recoverin	IPR001125	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Arabidopsis thaliana	NP_176814.1	calmodulin 4 [Arabidopsis thaliana]	8.0e-38	45%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPT3

Fln msg: STOP codon was not found. Distance to subject end: 77 aas, No stop codon before M and low homology subject,

Fln protein: MAFSQSMVENFKEAFALFDKKGHGVIDVASLGLVMRAIGLEPSDAELHNMITEVDGSGKGAVDFAEFMKMMAKNGPTTANEIKETFTIFNASGSGSISKAELKAIMQRFGENITDQEVEDMMKVADPNGTGSVSFADFEPSFSMIKPSQL

Protein Length: 151

Fln nts: ATTGTTCTCCGCGCTTCCGTGAGACCTACAGAC_-_ATGGCTTTCTCTCAGTCGATGGTCGAGAACTTCAAGGAGGCCTTCGCCCTCTTCGACAAGAAGGGTCACGGTGTCATCGACGTTGCCTCGCTCGGCCTCGTCATGCGCGCCATTGGTCTCGAGCCTAGTGATGCTGAGCTCCACAACATGATTACTGAGGTCGACGGCTCTGGCAAGGGCGCTGTTGACTTTGCCGAGTTCATGAAGATGATGGCCAAGAACGGCCCCACCACCGCCAACGAGATCAAGGAGACCTTCACCATCTTCAATGCATCGGGCAGTGGCTCCATCTCAAAAGCTGAGCTCAAGGCCATCATGCAGCGCTTTGGCGAGAACATCACAGACCAGGAGGTTGAGGATATGATGAAGGTCGCCGACCCCAACGGCACGGGCTCCGTCAGCTTCGCCGACTTCGAGCCGTCATTCTCGATGATTAAGCCGTCTCAACTC

Fln Alignment:

AllPine_b_c28230___SQSMVENFKEAFALFDKKGHGVIDVASLGLVMRAIGLEPSDAELHNMITEVDGSGKGAVDFAEFMKMMAKNGPTT--ANEIKETFTIFNASGSGSISKAELKAIMQRFGENITDQEVEDMMKVADPNGTGSVSFADF
A9NPT3________________TEEQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFAEFLNLMARKVKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain