SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene190288

Length: 369 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene190288
TCCGGCTTCAGAATGACCTACTTCGGCCGTCTGTGCACTCACGCCATGGTCTGGACCCTGGAGCTGCTGCGCGTGGCCCCTGCCGGCTCCACCCGTGTCTCTGCTCTGCTGAACGCCACTGCCATCGACCTGTGCGATGGTGGCAAGGATGCTATCTTTACTCCTTCCTTCTTCTTCTTGGCTAGAAAGAAGTAAATAGCTAACTGCTGCTGCGTATACTAATAGTAACAGAGTAGTATGGAGGAGGTTGTAGTGGTAGTATTGTAGGTAGTCGTGTAGTGATGGTGCGCTTTTTGCTCTAATTGGAGCGATTTGTCACTGTTAGGTGAATTTTGTTCGTAAAGCTGTAAATTATTTGTTTCACTTTAG

Ace file of the UniGene sp_v3.0_unigene190288 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative endosperm C-24 sterol methyltransferase [Oryza sativa Japonica Group]	-	-	5.0e-11	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%

Source	ECs	Term	Type	e value	Identity
Sma3	Sterol 24-C-methyltransferase.	EC:2.1.1.41	-	4.339e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Steroid biosynthesis	00100	4.339e-09	%
Sma3	Biosynthesis of terpenoids and steroids	01062	4.339e-09	%
Sma3	Biosynthesis of plant hormones	01070	4.339e-09	%
Sma3	Metabolic pathways	01100	4.339e-09	%
Sma3	Biosynthesis of secondary metabolites	01110	4.339e-09	%

Source	Gene names
Sma3	OSJNBa0059E14.10; OsI_13994; RCOM_0373320; THAPSDRAFT_32029; smt;

Source	GOs	Term	Type	Identity
Sma3	sterol 24-C-methyltransferase activity	GO:0003838	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	steroid biosynthetic process	GO:0006694	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Methyltransferase type 11	IPR013216	-	0.0	-
Sma3	Sterol methyltransferase C-terminal	IPR013705	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G13710.1	SMT1, CPH sterol methyltransferase 1 chr5:4424048-4426866 REVERSE LENGTH=336	2.0e-13	55%
RefSeq	Arabidopsis thaliana	NP_001078579.1	cycloartenol-c-24-methyltransferase [Arabidopsis thaliana]	2.0e-13	55%
RefSeq	Populus trichocarpa	XP_002336095.1	predicted protein [Populus trichocarpa]	4.0e-12	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRC7

Fln msg: your sequence is shorter than subject: 65 - 348

Fln protein: SGFRMTYFGRLCTHAMVWTLELLRVAPAGSTRVSALLNATAIDLCDGGKDAIFTPSFFFLARKK*

Protein Length: 66

Fln nts: TCCGGCTTCAGAATGACCTACTTCGGCCGTCTGTGCACTCACGCCATGGTCTGGACCCTGGAGCTGCTGCGCGTGGCCCCTGCCGGCTCCACCCGTGTCTCTGCTCTGCTGAACGCCACTGCCATCGACCTGTGCGATGGTGGCAAGGATGCTATCTTTACTCCTTCCTTCTTCTTCTTGGCTAGAAAGAAGTAA___ATAGCTAACTGCTGCTGCGTATACTAATAGTAACAGAGTAGTATGGAGGAGGTTGTAGTGGTAGTATTGTAGGTAGTCGTGTAGTGATGGTGCGCTTTTTGCTCTAATTGGAGCGATTTGTCACTGTTAGGTGAATTTTGTTCGTAAAGCTGTAAATTATTTGTTTCACTTTAG

Fln Alignment:

AllPine_b_c28031___SGFRMTYFGRLCTHAMVWTLELLRVAPAGSTRVSALLNATAIDLCDGGKDAIFTPSFFFLARK
C0PRC7________________SSFRLTALGRLLTRNMVRILEFLRLAPEGSERVSSFLEKAAEGLVEGGRKEIFTPMYFFVARK

SSRs (tot: 1)

Start position	End position	Sequence	Length
191	202	AAG AAG AAG AAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain