SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene190180

Length: 414 nt

UniGene Fasta

>sp_v3.0_unigene190180
CGGACAGAGAAGTACAACGTATTCTCCTGGAACTTTTGAATCAAATGGATGGTTTTGACGTTACTGTCAACGTCAAGGTCATTATGGCTACAAATCGTGCTGATACGTTAGATCCCGCTCTCCTGAGACCTGGAAGACTTGACCGTAAGATTGAATTCCCTCTGCCCGATCGTAGACAAAAGCGCCTTATTTTCCAAGTTATTACATCAAAGATGAACTTGAGCGAGGAAGTAGATCTCGAAGATTACGTCTCACGGCCCGATCAAATTAGTGGTGCTGAAATCCACTCAATTTGCCAAGAAGCTGGTATGCAAGCAGTCAGAAAGAACAGATACGTCATTTTGCCAAAGGACTTTGAAAAGGGTTACAAGGCCAACGTCAAGGGAGCTCAAAACGAATTCGATTTCTACAATT

Ace file of the UniGene sp_v3.0_unigene190180

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	26S protease regulatory subunit 6B homolog n=4 Tax=Dictyosteliida RepID=PRS6B_DICDI	-	-	0.0	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Proteasomal ATPase	-	-	3.911e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Microtubule-severing ATPase.	EC:3.6.4.3	-	9.279e-14	-

Source	Gene names
Sma3	26S proteasome subunit; AP2_E06.1; AT4g29040; At1g09100; At1g45000; At1g45000/F27F5.8; At1g53750; At2g20140; At3g05530; At3g05530/F22F7.1; At4g29040; At5g19990; At5g20000; At5g43010; At5g58290; AtSUG1; BrTBP; CHLREDRAFT_184001; CHLREDRAFT_188404; CHLREDRA

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	protein catabolic process	GO:0030163	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NSF attachment protein	IPR000744	-	-
Sma3	Chaperonin ClpA/B	IPR001270	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	26S proteasome subunit P45	IPR005937	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G58290.1	RPT3 regulatory particle triple-A ATPase 3 chr5:23569155-23571116 FORWARD LENGTH=408	87%
RefSeq	Arabidopsis thaliana	NP_200637.1	regulatory particle triple-A ATPase 3 [Arabidopsis thaliana]	87%
RefSeq	Populus trichocarpa	XP_002322593.1	predicted protein [Populus trichocarpa]	86%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8Q6

Fln msg: STOP codon was not found. Distance to subject end: 0 aas, your sequence is shorter than subject: 137 - 214

Fln protein: DREVQRILLELLNQMDGFDVTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSEEVDLEDYVSRPDQISGAEIHSICQEAGMQAVRKNRYVILPKDFEKGYKANVKGAQNEFDFYN

Protein Length: 138

Fln nts: CGGACAGAGAAGTACAACGTATTCTCCTGGAACTTTTGAATCAAATGGATGGTTTTGACGTTACTGTCAACGTCAAGGTCATTATGGCTACAAATCGTGCTGATACGTTAGATCCCGCTCTCCTGAGACCTGGAAGACTTGACCGTAAGATTGAATTCCCTCTGCCCGATCGTAGACAAAAGCGCCTTATTTTCCAAGTTATTACATCAAAGATGAACTTGAGCGAGGAAGTAGATCTCGAAGATTACGTCTCACGGCCCGATCAAATTAGTGGTGCTGAAATCCACTCAATTTGCCAAGAAGCTGGTATGCAAGCAGTCAGAAAGAACAGATACGTCATTTTGCCAAAGGACTTTGAAAAGGGTTACAAGGCCAACGTCAAGGGAGCTCAAAACGAATTCGATTTCTACAATT

Fln Alignment:

AllPine_b_c27913___DREVQRILLELLNQMDGFDVTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSEEVDLEDYVSRPDQISGAEIHSICQEAGMQAVRKNRYVILPKDFEKGYKANVKGAQNEFDFY
D5A8Q6________________DREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEITAICQEAGMHAVRKNRYVILPKDFEKGYRANVKKPDTDFDFY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain