SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene190098

Length: 444 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene190098
ATCCTCTTTTGGGCTGGGACACGGACCAATTCAACATGGACATTCGAGCCACCACGCTGGCAATGTCAGTGGTCTTGAAACAGGGCGGTCTGGGAACCGGGGGACTGAACTTCGACGCCAAGTTGAGAAGGGAATCCACAGACCTCGAGGATCTCTTCATTGGTCACATCGGTGGCATGGACTGCTTTGCAAGAGGACTTCGAAACGCTGCCAAACTGCACACGGAACGTGCCTTGAGTGCCAGGGTGGAGGAGAGATACCAGAGTTGGAGGGACACCCAATTGGGCAAGGACATCGAATCTGGGAACTTTGACTTCGATGCTTTGAAGAAACACGTGCTCAACGCCTCTTCTTGTGATCACACCAAACCCAACCCACCGATCAGCGGAAAACAGGAGCTCTACGAACTCATCCTCAATGATTACTTGCACTAATGAAGAGACG

Ace file of the UniGene sp_v3.0_unigene190098 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Xylose isomerase n=1 Tax=Phytophthora infestans T30-4 RepID=D0NA42_PHYIT	-	-	3.0e-32	53%
FL-Next	sp=Xylose isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	Xylose isomerase	-	-	4.354e-32	-

Source	ECs	Term	Type	e value	Identity
Sma3	Xylose isomerase.	EC:5.3.1.5	-	4.1e-36	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040	4.1e-36	%
Sma3	Fructose and mannose metabolism	00051	4.1e-36	%
Sma3	Metabolic pathways	01100	4.1e-36	%

Source	Gene names
Sma3	At5g57655; GSVIVT00031456001; MICPUN_92573; Os07g0669100; OsI_27268; OsJ_25511; P0625E02.119; PHATRDRAFT_30786; PHYPADRAFT_192456; POPTRDRAFT_737826; RCOM_0077940; VITISV_037086; XYLA;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	xylose isomerase activity	GO:0009045	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	pentose-phosphate shunt	GO:0006098	Biological Process	-
Sma3	D-xylose metabolic process	GO:0042732	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Xylose isomerase	IPR001998	-	-
Sma3	Xylose isomerase, TIM barrel domain	IPR012307	-	-
Sma3	Xylose isomerase-like, TIM barrel domain	IPR013022	-	-
Sma3	Xylose isomerase, bacterial-type	IPR013452	-	-
Sma3		IPR018115	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G57655.2	xylose isomerase family protein chr5:23347030-23349805 FORWARD LENGTH=477	3.0e-37	54%
RefSeq	Arabidopsis thaliana	NP_568861.3	xylose isomerase [Arabidopsis thaliana]	4.0e-37	54%
RefSeq	Populus trichocarpa	XP_002324488.1	predicted protein [Populus trichocarpa]	5.0e-37	50%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKP5

Fln msg: your sequence is shorter than subject: 144 - 399

Fln protein: PLLGWDTDQFNMDIRATTLAMSVVLKQGGLGTGGLNFDAKLRRESTDLEDLFIGHIGGMDCFARGLRNAAKLHTERALSARVEERYQSWRDTQLGKDIESGNFDFDALKKHVLNASSCDHTKPNPPISGKQELYELILNDYLH*

Protein Length: 145

Fln nts: ATCCTCTTTTGGGCTGGGACACGGACCAATTCAACATGGACATTCGAGCCACCACGCTGGCAATGTCAGTGGTCTTGAAACAGGGCGGTCTGGGAACCGGGGGACTGAACTTCGACGCCAAGTTGAGAAGGGAATCCACAGACCTCGAGGATCTCTTCATTGGTCACATCGGTGGCATGGACTGCTTTGCAAGAGGACTTCGAAACGCTGCCAAACTGCACACGGAACGTGCCTTGAGTGCCAGGGTGGAGGAGAGATACCAGAGTTGGAGGGACACCCAATTGGGCAAGGACATCGAATCTGGGAACTTTGACTTCGATGCTTTGAAGAAACACGTGCTCAACGCCTCTTCTTGTGATCACACCAAACCCAACCCACCGATCAGCGGAAAACAGGAGCTCTACGAACTCATCCTCAATGATTACTTGCACTAA___TGAAGAGACG

Fln Alignment:

AllPine_b_c27826___GWDTDQFNMDIRATTLAMSVVLKQGGLGTGGLNFDAKLRRESTDLEDLFIGHIGGMDCFARGLRNAAKLHTERALSARVEERYQSWRDTQLGKDIESGNFDFDALKKHVLNASSCDHTKPNPPI-SGKQELYELILNDYL
B8LKP5________________GWDTDQFLTDIGEATLVMLTVIKNGGLAPGGFNFDAKLRRESVDVEDLFIGHISGMDTLARGLRNAAKLLQDGKLSELVAKRYET-LNSKLGALIEEEEVSFEELEKKA-------HEWGEPPLSSGKQELAEMIFQSYL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain