SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene189956

Length: 347 nt

UniGene Fasta

>sp_v3.0_unigene189956
ATGATGATGCAGCATGGCTGACATACTTTGTTGTCTACGGTTTTTTCGGTTTGATCGAATCCTTCACTGACTTCTTCCTATACTGGATTCCGTTTTATTACCTGGCCAAGATGATTTTCTTGCTCTGGTTGTACCTGCCGCAGACCAAGGGAGCCGAATTCGTGTTCAAGAAGGCCATCGACCCTATTCTCTCCAAATATGAGAAGCAGATCGACGCCGGTCTGGAGAAAGCTCGCCTCGCAGGCGATTCTGTGGCGTCAATCGGCCGCAAGAAGATTGGCGAAGTCACCGAGACCGAACAACAACCCAAGAAGACCATGTAGTTGCTCGTGCTTCACTCGTATCTC

Ace file of the UniGene sp_v3.0_unigene189956

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TB2/DP1/HVA22 family integral membrane protein that may be involved in membrane trafficking, 3x transmembrane domains [Cryptosporidium parvum Iowa II] gb\|EAK88414.1\| TB2/DP1/HVA22 family integral membrane protein that may be involved in membrane trafficki	-	-	6.0e-18	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%

Source	Gene names
Sma3	THAPSDRAFT_262530;

Source	InterPros	Term	Type	e value	Identity
Sma3	TB2/DP1/HVA22-related protein	IPR004345	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0N9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 32 aas, your sequence is shorter than subject: 107 - 194

Fln protein: DDAAWLTYFVVYGFFGLIESFTDFFLYWIPFYYLAKMIFLLWLYLPQTKGAEFVFKKAIDPILSKYEKQIDAGLEKARLAGDSVASIGRKKIGEVTETEQQPKKTM*

Protein Length: 108

Fln nts: ATGATGATGCAGCATGGCTGACATACTTTGTTGTCTACGGTTTTTTCGGTTTGATCGAATCCTTCACTGACTTCTTCCTATACTGGATTCCGTTTTATTACCTGGCCAAGATGATTTTCTTGCTCTGGTTGTACCTGCCGCAGACCAAGGGAGCCGAATTCGTGTTCAAGAAGGCCATCGACCCTATTCTCTCCAAATATGAGAAGCAGATCGACGCCGGTCTGGAGAAAGCTCGCCTCGCAGGCGATTCTGTGGCGTCAATCGGCCGCAAGAAGATTGGCGAAGTCACCGAGACCGAACAACAACCCAAGAAGACCATGTAGTTGCTCGTGCTTCACTCGTATCTC

Fln Alignment:

AllPine_b_c27674___DDAAWLTYFVVYGFFGLIESFTDFFLYWIPFYYLAKMIFLLWLYLPQTKGAEFVFKKAIDPILSKYEKQIDAGLEKARLAGDSVASIGRKKIGEVTETE
A9P0N9________________DQDQWLIYWAVYGSFSIVEVFPDKLLSWFPLYYHAKLAFLIWLQLPASCGSRHLYMKYLRPFLLKHQQRLD------QIAGGTSSEINRLLLRHQSEIQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain