SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene189769

Length: 402 nt

UniGene Fasta

>sp_v3.0_unigene189769
CAAGAGATTAATTTCGTTCTCTAGTTCGTACCGCTAGGAAAATGACAAATCCAAAAGGTTATCGTCGCGGTACGCGTCATTTATTTGCACGCGATTTCAAGAAAAATGGCCGTATTCCTTTGGCTACCTATATGAAAATCTATAAACGTGGTGATATTGTTGATATTAAAGGTAATGGTGCTGTTCAAAAAGGTATGCCACATCGATTTTATCATGGTAAAACTGGTCGTGTTTTTAATGTAACTCGACATGCTGTTGGTATTATCGTTAACAAACGTGTTCGTCATCGTGTTATTGCTAAACGTATCAATGTTCGTATTGAACATATTAAACATTCAAAATGTCGTTCTGATTTTCTCAATCGTGTTAAACTCAGTGAACAATTGAAACGAGCAGCAAAAG

Ace file of the UniGene sp_v3.0_unigene189769

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to ribosomal protein L21 n=1 Tax=Nasonia vitripennis RepID=UPI00015B4043	-	-	0.0	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	60S ribosomal protein L21	-	-	3.071e-10	-

Source	Gene names
Sma3	At1g09590; At1g09690; At1g57660; At1g57860; CHLREDRAFT_24354; F14J9.25; F21M12.8; GSVIVT00006241001; GSVIVT00025419001; GSVIVT00025430001; LOC_Os03g04750; LOC_Os10g32820; MICPUCDRAFT_49736; MICPUN_95995; OSJNBa0006L06.3; OSTLU_27810; Os03g0141000; Os10g04

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L21e	IPR001147	-	0.0	-
Sma3	Ribosomal protein L21e, conserved site	IPR018259	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G09690.1	Translation protein SH3-like family protein chr1:3136407-3137430 REVERSE LENGTH=164	1.96182e-44	56%
RefSeq	Arabidopsis thaliana	NP_563849.1	60S ribosomal protein L21-1 [Arabidopsis thaliana]	1.96182e-44	56%
RefSeq	Populus trichocarpa	XP_002304624.1	predicted protein [Populus trichocarpa]	0.0	59%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLM4

Fln msg: Distance to subject end: 45 aas, your sequence is shorter than subject: 120 - 165

Fln protein: MTNPKGYRRGTRHLFARDFKKNGRIPLATYMKIYKRGDIVDIKGNGAVQKGMPHRFYHGKTGRVFNVTRHAVGIIVNKRVRHRVIAKRINVRIEHIKHSKCRSDFLNRVKLSEQLKRAAK

Protein Length: 121

Fln nts: CAAGAGATTAATTTCGTTCTCTAGTTCGTACCGCTAGGAAA_-_ATGACAAATCCAAAAGGTTATCGTCGCGGTACGCGTCATTTATTTGCACGCGATTTCAAGAAAAATGGCCGTATTCCTTTGGCTACCTATATGAAAATCTATAAACGTGGTGATATTGTTGATATTAAAGGTAATGGTGCTGTTCAAAAAGGTATGCCACATCGATTTTATCATGGTAAAACTGGTCGTGTTTTTAATGTAACTCGACATGCTGTTGGTATTATCGTTAACAAACGTGTTCGTCATCGTGTTATTGCTAAACGTATCAATGTTCGTATTGAACATATTAAACATTCAAAATGTCGTTCTGATTTTCTCAATCGTGTTAAACTCAGTGAACAATTGAAACGAGCAGCAAAAG

Fln Alignment:

AllPine_b_c27329___GYRRGTRHLFARDFKKNGRIPLATYMKIYKRGDIVDIKGNGAVQKGMPHRFYHGKTGRVFNVTRHAVGIIVNKRVRHRVIAKRINVRIEHIKHSKCRSDFLNRVKLSEQLKRAAK
A9NLM4________________GVRARTRDLFARPFRKKGYAPLSTYLRSYKIGQYVDIKVNGSIHKGMPHKFYHGRTGVVWNVTKRAIGVEMNKQVRNKIIKKRIHVRIEHVQPSRCAEDAILRRKNNDQLKAEAK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain