SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene189765

Length: 540 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene189765
CCCAAGAGATGATCCAAACAAGAAGCCACATTTGACTGCCTTCTTTGGCTTCAAGGCTGGTATGACTCACATCGTCCGTGAAGTCGAAAAGCCAGGATCAAAGGTGCACAGAAAGGAAGTCGTGGAAGCTGTCACCATCATCGAAACTCCACCAATCGTCGTTGTTGGCCTTGTTGGTTACATCGAAACTCCACAAGGACTCCGCTCCCTCACTACCGTCTGGGCTCACCACTTGAGCGAAGATGTCAAGAGACGCTTCTACAAGAACTGGTACCGCTCCAAGAAGAAGGCTTTCACCAAGTACCAAAAGTCAATCAAGGAGAACCCAAAGATCATCGAAACCGAACTCAAGCGCATCCAGAAGTACTGCACTGTCGTCCGTGTTCTCGCTCATTCCCAAGTCCGCAAGCTTAACAAGCGTCAAAAGAAGGCTCACCTTATGGAAATCCAAGTCAACGGTGGATCTATTGCCGATAAGGTCAAGTATGCCCACGGCTTGTTCGAAAAGCCCATCCACGTCTCCGACCTCTTCACCGAGAG

Ace file of the UniGene sp_v3.0_unigene189765 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L3 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NY29_PHYIT	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Ribosomal protein L3	-	-	2.118e-21	-

Source	Gene names
Sma3	ARP1; ARP2; AT1G61580; At1g43170; At1g61580; CHLREDRAFT_126189; EMB2207; GSVIVT00010223001; GSVIVT00031743001; MICPUCDRAFT_31261; MICPUN_89851; OSTLU_23838; Os12g0167900; OsI_35258; OsI_37606; OsJ_35352; Ot01g00490; PHATR_13361; PHYPADRAFT_190959; PHYPADR

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L3	IPR000597	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G61580.1	RPL3B, ARP2 R-protein L3 B chr1:22720833-22722402 REVERSE LENGTH=390	64%
RefSeq	Arabidopsis thaliana	NP_176352.1	60S ribosomal protein L3-2 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002302168.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZI7

Fln msg: Distance to subject end: 174 aas, your sequence is shorter than subject: 179 - 389

Fln protein: PRDDPNKKPHLTAFFGFKAGMTHIVREVEKPGSKVHRKEVVEAVTIIETPPIVVVGLVGYIETPQGLRSLTTVWAHHLSEDVKRRFYKNWYRSKKKAFTKYQKSIKENPKIIETELKRIQKYCTVVRVLAHSQVRKLNKRQKKAHLMEIQVNGGSIADKVKYAHGLFEKPIHVSDLFTE

Protein Length: 180

Fln nts: CCCAAGAGATGATCCAAACAAGAAGCCACATTTGACTGCCTTCTTTGGCTTCAAGGCTGGTATGACTCACATCGTCCGTGAAGTCGAAAAGCCAGGATCAAAGGTGCACAGAAAGGAAGTCGTGGAAGCTGTCACCATCATCGAAACTCCACCAATCGTCGTTGTTGGCCTTGTTGGTTACATCGAAACTCCACAAGGACTCCGCTCCCTCACTACCGTCTGGGCTCACCACTTGAGCGAAGATGTCAAGAGACGCTTCTACAAGAACTGGTACCGCTCCAAGAAGAAGGCTTTCACCAAGTACCAAAAGTCAATCAAGGAGAACCCAAAGATCATCGAAACCGAACTCAAGCGCATCCAGAAGTACTGCACTGTCGTCCGTGTTCTCGCTCATTCCCAAGTCCGCAAGCTTAACAAGCGTCAAAAGAAGGCTCACCTTATGGAAATCCAAGTCAACGGTGGATCTATTGCCGATAAGGTCAAGTATGCCCACGGCTTGTTCGAAAAGCCCATCCACGTCTCCGACCTCTTCACCGAGAG

Fln Alignment:

AllPine_b_c27320___PRDDPNKKPHLTAFFGFKAGMTHIVREVEKPGSKVHRKEVVEAXXXXXXXXXXXVGLVGYIETPQGLRSLTTVWAHHLSEDVKRRFYKNWYRSKKKAFTKYQKSI--KENPKIIETELKRIQKYCTVVRVLAHSQVRKL-NKRQKKAHLMEIQVNGGSIADKVKYAHGLFEKPIHVSDLF
A9NZI7________________PRDDQSKPCKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTLIETPPMVIVGVVAYIKTPRGLRTLNTVWAQHLSEEVRRRFYKNWYRAKKKAFTKYAKKYDSEEGKKDIQTELEKMKKYATVIRVLAHTQIKKMKGLKQKKAHLMEIQVNGGTVAQKVDYAYNFFEKQVPIDALF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain