SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene189688

Length: 376 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene189688
AAGTGGAAGTGGTTGGCAACCCAAGGATGCAGTGGCTGCGTGGATCGGGGAGGACCGTTACTTCAACTATCATACTCATTCGTGCAATGGGTTTCAGGAGTGCGGGCACTACACTCAAATTGTGTGGAAGAATTCTCGAACGGTGGGTTGCGCTAGGGTCATTTGCAACGACGGTGATACATTCATGACCTGCAATTACAATCCCCCTGGCAATTATGTTGGTCAAAACCCATACTAAAATTGCATCCAATATGCTTCATTGGCTCCTCTCTCTTCCTTGTAGGTAGAGATGTCAATGCCAGAACTGTTGAAGTCAATGTAATTCATTTCATTCCAATAAGCTCTTAGAGTATGCCTGAGAAATTCCATTAGCTAC

Ace file of the UniGene sp_v3.0_unigene189688 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	STS14 protein, putative n=1 Tax=Ricinus communis RepID=B9T2E3_RICCO	-	-	3.0e-29	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	STS14 protein, putative	-	-	6.069e-21	-

Source	Gene names
Sma3	AT4g25780; AT4g25790; AT4g31470; At4g25780; At4g25780/F14M19_60; At4g25790; At4g30320; At4g31470; At5g57625; BPR1; Cuc m 3; F3L17.40; GSVIVT00031447001; GSVIVT00038567001; GSVIVT00038569001; GSVIVT00038575001; GSVIVT00038576001; GSVIVT00038578001; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Allergen V5/Tpx-1-related	IPR001283	-	-
Sma3	Ves allergen	IPR002413	-	-
Sma3	CAP domain	IPR014044	-	-
Sma3	Allergen V5/Tpx-1-related, conserved site	IPR018244	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G25780.1	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein chr4:13121107-13121679 FORWARD LENGTH=190	3.0e-35	61%
RefSeq	Arabidopsis thaliana	NP_194308.1	putative pathogenesis-related protein [Arabidopsis thaliana]	5.0e-35	61%
RefSeq	Populus trichocarpa	XP_002325075.1	predicted protein [Populus trichocarpa]	7.0e-38	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNG4

Fln msg: your sequence is shorter than subject: 79 - 175

Fln protein: SGSGWQPKDAVAAWIGEDRYFNYHTHSCNGFQECGHYTQIVWKNSRTVGCARVICNDGDTFMTCNYNPPGNYVGQNPY*

Protein Length: 80

Fln nts: AAGTGGAAGTGGTTGGCAACCCAAGGATGCAGTGGCTGCGTGGATCGGGGAGGACCGTTACTTCAACTATCATACTCATTCGTGCAATGGGTTTCAGGAGTGCGGGCACTACACTCAAATTGTGTGGAAGAATTCTCGAACGGTGGGTTGCGCTAGGGTCATTTGCAACGACGGTGATACATTCATGACCTGCAATTACAATCCCCCTGGCAATTATGTTGGTCAAAACCCATACTAA___AATTGCATCCAATATGCTTCATTGGCTCCTCTCTCTTCCTTGTAGGTAGAGATGTCAATGCCAGAACTGTTGAAGTCAATGTAATTCATTTCATTCCAATAAGCTCTTAGAGTATGCCTGAGAAATTCCATTAGCTAC

Fln Alignment:

AllPine_b_c27198___SGSGWQPKDAVAAWIGEDRYFNYHTHSCNGFQECGHYTQIVWKNSRTVGCARVICNDGDTFMTCNYNPPGNYVGQNPY
A9NNG4________________SGSDWQPKDAVAAWVGEDRFFNYHTHSCNGFEECGHYTQIVWKHSRTVGCARVICHDGDIFMTCNYNPPGNYIGQNPY

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain