SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene189513

Length: 667 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene189513

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytosolic glycoprotein FP21 n=2 Tax=Dictyosteliida RepID=D3B7B4_POLPA	-	-	0.0	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Fimbriata-associated protein	-	-	8.007e-23	-

Source	Gene names
Sma3	ASK1; ASK10; ASK11; ASK12; ASK13; ASK14; ASK15; ASK16; ASK18; ASK2; ASK3; ASK4; ASK5; ASK9; At1g10230; At1g20140; At1g75950; At2g03170; At2g03190; At2g25700; At3g21850; At3g21860; At3g25650; At3g60010; At3g60020; At4g34210; At4g34470; At5g42190; B1274F11.

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	spindle	GO:0005819	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	chromosome segregation	GO:0007059	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	regulation of mitotic cell cycle	GO:0007346	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	negative regulation of DNA recombination	GO:0045910	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SKP1 component	IPR001232	-	-
Sma3		IPR004348	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	SKP1 component, dimerisation	IPR016072	-	-
Sma3	SKP1 component, POZ	IPR016073	-	-
Sma3	E3 ubiquitin ligase, SCF complex, Skp subunit	IPR016897	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G42190.1	ASK2, SKP1B E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein chr5:16854495-16855516 REVERSE LENGTH=171	59%
RefSeq	Arabidopsis thaliana	NP_568603.1	S-phase kinase-associated protein 1 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002327737.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
260		75		25	0.996473
275		28		71	1.0
299	87	12			0.992554
308		11		88	0.923564
329			11	88	0.923564
332		88		11	0.923564
353		11		88	0.923564
354		11		88	0.923564
356			88	11	0.923564
374	88			11	0.923564
386		88		11	0.991528
398	88			11	0.923564
401		88		11	0.923564
404		77		22	0.999999
422	37			62	1.0
425			11	88	0.923564
428		12		87	0.992554
452	16	83			0.994512
484	85			14	0.993533
487	85			14	0.993533
489		85	14		0.993533
493		85	14		0.993533
496		80		20	0.995493
514	20		80		0.995494
593		66		33	0.997476
614	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain