SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene189496

Length: 837 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene189496 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CAP domain containing protein	-	-	5.0e-19	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	Pathogenesis-related protein 1	-	-	3.282e-27	-

Source	Gene names
Sma3	AT4g25780; AT4g25790; AT4g31470; AT4g33720; AT4g33720/T16L1_210; AT4g33730; At1g01310; At2g14580; At2g14610; At2g19990; At3g09590; At3g19690; At4g25780; At4g25780/F14M19_60; At4g25790; At4g30320; At4g31470; At4g33720; At4g33730; At5g02730; At5g26130; At5g

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	response to vitamin B1	GO:0010266	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Allergen V5/Tpx-1-related	IPR001283	-	-
Sma3	Ves allergen	IPR002413	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	CAP domain	IPR014044	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Allergen V5/Tpx-1-related, conserved site	IPR018244	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G31470.1	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein chr4:15261746-15262303 REVERSE LENGTH=185	55%
RefSeq	Arabidopsis thaliana	NP_194875.1	putative pathogenesis-related protein [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002331680.1	predicted protein, partial [Populus trichocarpa]	57%

Full-Lengther Next Prediction

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
271	33		66		0.997453
299		66		33	0.997457
341		33		66	0.997457
344		33		66	0.997453
387		33		66	0.997476
388		33		66	0.997476
452		66		33	0.997467
460		33		66	0.997476
464		33		66	0.997452
471	33	66			0.997454
473	33		66		0.997452
476	33		66		0.997467
529		33		66	0.997476
542		66		33	0.997452
546		66		33	0.997458
547	33		66		0.997453
579		40	60		1.0
584		60		40	1.0
600		75		25	1.0
601	25		75		1.0
612	11		88		0.923695
623		88		11	0.923646
624	37		62		1.0
640	77		22		0.999999
654		88	11		0.924009
675		11		88	0.92373
686	77		22		0.999999
696	22		77		0.999999
706		44		55	1.0
707	12		87		0.992554
721		22	77		0.999999
736	77		22		0.999999
738			37	62	1.0
747	81		18		0.999994
764		81	18		0.999994
767	20		80		0.999996
782	12		75	12	0.975346
822			75	25	0.996475
823	25		75		0.996474
825	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain