SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene189448

Length: 1166 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene189448 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR	-	-	0.0	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	Retrotransposon protein, putative, Ty1-copia subclass	-	-	4.02e-18	-

Source	Gene names
Sma3	AT4g10460; AT4g21360; At2g05960; At2g07550; At2g13930; At2g15700; At2g17490; At2g19840; At2g21460; F11I4_21; F28L22.3; F7L13.40; GSVIVT00019821001; H0306F03.15; H0413E07.4; LOC_Os03g26290; LOC_Os03g27910; LOC_Os03g46450; LOC_Os03g61660; LOC_Os10g01450; LO

Source	GOs	Term	Type	Identity
Sma3	phosphopyruvate hydratase complex	GO:0000015	Cellular Component	-
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	dihydrofolate reductase activity	GO:0004146	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	exonuclease activity	GO:0004527	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	phosphopyruvate hydratase activity	GO:0004634	Molecular Function	-
Sma3	ionotropic glutamate receptor activity	GO:0004970	Molecular Function	-
Sma3	extracellular-glutamate-gated ion channel activity	GO:0005234	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	NADP binding	GO:0050661	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	glycine biosynthetic process	GO:0006545	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	nucleotide biosynthetic process	GO:0009165	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	transposition	GO:0032196	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Protein of unknown function DUF295	IPR005174	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3		IPR010256	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: your sequence is shorter than subject: 365 - 407

Fln protein: DSSLDFDFCENCVYGKQNRVSFPSGGKRTKQILELVHSDVFGPVKVPSLGKSVYYVSFIDDFSRNTWIYFLKKKSEVFDRFKEFKALVENQTEKKIKVLRTDNGGEFCSKEFEEFCKKCGIAQ*KTTPYTPQQNGVAKRMNKTLMERERSMPSGARLGQEFWAEAVDTACYLINRSPSSALEDKNPQEVWTGKKPSLSHLRVFGCDAYVHVPKEKRTKLDSKSEKCIFIGYKDGLKGYKLWNPVTRKVVYSRDVVFREVKDIIKHEVQPKEPEKIEFELKEEESDSTTEEESEDEEPQTPGVRRSVRERRQPERYSPSAFCSNFALSITDDDPRTVKEAIDSEDGKLWKEAMVDEMASLHKNEA*

Protein Length: 366

Fln nts: GATAGCTCTCTGGATTTTGATTTCTGTGAAAATTGTGTGTATGGAAAGCAGAATCGAGTGAGTTTCCCCTCTGGTGGTAAGAGGACGAAACAAATATTAGAGCTTGTGCACAGTGATGTGTTTGGACCTGTGAAGGTTCCATCACTGGGTAAGTCTGTGTACTATGTATCATTCATAGATGACTTCTCAAGGAATACATGGATATATTTCCTTAAGAAGAAATCTGAAGTCTTTGACAGGTTTAAAGAATTTAAGGCTCTGGTGGAAAATCAGACAGAGAAGAAGATAAAGGTGTTGAGGACAGATAATGGTGGAGAATTTTGCAGCAAGGAATTTGAAGAATTCTGTAAGAAGTGTGGTATAGCACAATAGAAGACTACTCCATATACACCTCAGCAAAATGGAGTCGCAAAAAGAATGAACAAGACGTTGATGGAAAGGGAAAGAAGCATGCCCAGTGGTGCCAGGTTAGGACAGGAATTCTGGGCAGAGGCAGTGGATACTGCATGTTACCTGATCAACAGATCACCTTCATCAGCGTTGGAGGATAAGAATCCACAAGAAGTATGGACTGGTAAGAAACCCTCTCTTTCACATCTGAGGGTATTTGGATGTGATGCATATGTACATGTTCCAAAGGAGAAACGAACAAAGTTGGATAGTAAATCTGAAAAGTGCATATTTATTGGGTATAAGGATGGTTTAAAGGGTTATAAGCTTTGGAACCCAGTAACAAGGAAGGTTGTGTACAGTCGAGATGTGGTGTTCAGAGAGGTGAAAGATATTATTAAACATGAAGTCCAACCAAAGGAACCTGAGAAGATAGAGTTTGAGCTAAAGGAGGAAGAATCAGACTCTACAACAGAAGAGGAATCAGAAGATGAAGAGCCACAAACTCCGGGTGTAAGAAGATCAGTTCGAGAAAGAAGGCAGCCAGAAAGGTATAGTCCATCTGCTTTCTGTTCAAATTTTGCTTTATCTATTACTGATGATGATCCCAGAACTGTGAAGGAAGCAATAGATTCAGAGGATGGAAAACTCTGGAAAGAGGCCATGGTTGATGAAATGGCATCTTTGCACAAAAATGAGGCTTAA___GATCTGGTGGAGTTGCCGGCTAGAAGGAAACCCATTGGCAGCAAATGGGTGTTCAAAAAGAAGACAAATGC

Fln Alignment:

AllPine_b_c25796___CENCVYGKQNRVSFPSGGK-RTKQILELVHSDVFGPVKVPSLGKSVYYVSFIDDFSRNTWIYFLKKKSEVFDRFKEFKALVENQTEKKIKVLRTDNXXXXXXXXXXXXXXXXGIAQ*KTTPYTPQQNGVAKRMNKTLMERERSMPSGARLGQEFWAEAVDTACYLINRSPSSALEDKNPQEVWTGKKPSLSHLRVFGCDAYVHVPKEKRTKLDSKSEKCIFIGYKDGLKGYKLWNPVTRKVVYSRDVVFRE
B8LKX7________________CEGCMSGKQHMEKFIKGKSWRAKTPLHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGVAERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKPTVSHFKVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYSETSKAYRVYDPEKNEILIRRDVIFDE

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
97	25		75		0.996474
98		66		33	0.997452
116		75		25	0.996486
124		75		25	0.99649
126	33		33	33	0.997753
127	75		25		0.99649
133		75		25	0.996474
147		33		66	0.997452
149		50		50	1.0
151	50		50		1.0
161		66		33	0.997452
166	25	75			0.996474
177	66		33		0.997452
179	33	66			0.997452
180	75		25		0.996475
181	25		75		0.996479
182			25	75	0.996475
194	33	66			0.997452
202			75	25	0.996483
203	66	33			0.997452
204	66		33		0.997452
205		66	33		0.997452
214	25		75		0.996486
222	66		33		0.997452
232	50		50		1.0
236	50		50		1.0
253	25		75		0.996483
260		33		66	0.997452
261		33		66	0.997452
265	33	66			0.997452
267		66		33	0.997452
268	33		66		0.997452
269	25		50	25	0.995582
275		25	75		0.996481
284	25	75			0.996475
286			25	75	0.996475
292	25		75		0.996473
294		25		75	0.996473
297		75		25	0.996473
300		66		33	1.0
304	33		66		0.997452
305		33		66	0.997452
314	33	66			0.997452
324		66		33	0.997464
327		66		33	0.997452
330	33			66	0.997452
341		66		33	0.997453
357		66		33	0.997452
374	33		66		0.997452
376	33			66	0.997452
414	33		66		0.999945
422	33	66			0.997452
756		33		66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain