SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene189434

Length: 391 nt

UniGene Fasta

>sp_v3.0_unigene189434
CTCTCAGTGTAAGCATAGCATTTCATTTCTCGGTGAAGGAAAGGAAAGGAAAGAAGGAAAGAGCTCAGACGACGGGCACTGCACGCCGTCAATTTTCTTCTCTGTTTCGCGTTTGTAGTTATCTCGCAATTTAATTGAAGATGGCTGACGCAGAGGATATCCAGCCCCTTGTCTGTGACAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCTCCCAGGGCAGTGTTTCCAAGTATTGTTGGTCGCCCTCGTCATACTGGAGTCATGGTGGGGATGGGGCAGAAGGATGCATATGTAGGTGATGAGGCTCAATCTAAAAGAGGTATTCTTACTTTGAAGTATCCTATTGAGCATGGGATAGTCACCAACTGGGATGATAT

Ace file of the UniGene sp_v3.0_unigene189434

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Actin, putative n=2 Tax=core eudicotyledons RepID=B9SXZ5_RICCO	-	-	3.99931e-42	98%
FL-Next	tr=Actin 2; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	100%
Sma3	Actin	-	-	9.678e-17	-

Source	Gene names
Sma3	AC1; AC101; AC58; AC71; AC75; AC97; ACT; ACT-1; ACT1; ACT10; ACT11; ACT12; ACT13; ACT14; ACT15; ACT2; ACT3; ACT4; ACT5; ACT6; ACT7; ACT8; ACT9; ACTA; ACTB; ACTIN; AT3G18780; Ac1; Ac2; Act; Act1; Act2; Act3; Act5; Act7; Act8; ActA; At3g12110; At3g12110/T21

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytoskeleton	GO:0005856	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Actin-like	IPR004000	-	-
Sma3	Actin, conserved site	IPR004001	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G09810.1	ACT7 actin 7 chr5:3052809-3054220 FORWARD LENGTH=377	97%
RefSeq	Arabidopsis thaliana	NP_187818.1	actin-11 [Arabidopsis thaliana]	97%
RefSeq	Populus trichocarpa	XP_002298710.1	actin 1 [Populus trichocarpa]	98%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C3VIW4

Fln msg: Distance to subject end: 293 aas, your sequence is shorter than subject: 83 - 377

Fln protein: MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDD

Protein Length: 84

Fln nts: CTCTCAGTGTAAGCATAGCATTTCATTTCTCGGTGAAGGAAAGGAAAGGAAAGAAGGAAAGAGCTCAGACGACGGGCACTGCACGCCGTCAATTTTCTTCTCTGTTTCGCGTTTGTAGTTATCTCGCAATTTAATTGAAG_-_ATGGCTGACGCAGAGGATATCCAGCCCCTTGTCTGTGACAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCTCCCAGGGCAGTGTTTCCAAGTATTGTTGGTCGCCCTCGTCATACTGGAGTCATGGTGGGGATGGGGCAGAAGGATGCATATGTAGGTGATGAGGCTCAATCTAAAAGAGGTATTCTTACTTTGAAGTATCCTATTGAGCATGGGATAGTCACCAACTGGGATGATAT

Fln Alignment:

AllPine_b_c25718___MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDD
C3VIW4________________MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDD

SSRs (tot: 1)

Start position	End position	Sequence	Length
36	53	AAGGA AAGGA AAGGA AAG	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain