SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene189431

Length: 921 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene189431 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 750A1 n=1 Tax=Pinus taeda RepID=C75A1_PINTA	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Sma3	Flavonoid 3'-hydroxylase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.14.-.-	-	4.461e-25	-
Sma3	Flavonoid 3'-monooxygenase.	EC:1.14.13.21	-	7.936e-12	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Flavonoid biosynthesis	00941		7.936e-12	%
Sma3	Flavone and flavonol biosynthesis	00944		7.936e-12	%
Sma3	Biosynthesis of phenylpropanoids	01061		7.936e-12	%
Sma3	Metabolic pathways	01100		7.936e-12	%
Sma3	Biosynthesis of secondary metabolites	01110		7.936e-12	%
Sma3	N-methylcoclaurine 3'-monooxygenase.	EC:1.14.13.71	-	2.363e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Isoquinoline alkaloid biosynthesis	00950		2.363e-07	%
Sma3	Metabolic pathways	01100		2.363e-07	%
Sma3	Biosynthesis of secondary metabolites	01110		2.363e-07	%
Sma3	Flavonoid 3',5'-hydroxylase.	EC:1.14.13.88	-	3.728e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	3.728e-09	%
Sma3	Flavone and flavonol biosynthesis	00944	3.728e-09	%
Sma3	Biosynthesis of secondary metabolites	01110	3.728e-09	%

Source	Gene names
Sma3	At1g74550; At2g30750; At2g40890; At2g45570; At3g26230; At3g48270; At3g48280; At3g48300; At4g36220; At5g07990; BNF5H3; C3H2; C3H3; CYP703A4; CYP71; CYP71A1; CYP71A12; CYP71A23; CYP71A25; CYP71A26; CYP71A8; CYP71AP2v1; CYP71B24; CYP736A3v2; CYP736A4v1; CYP7

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	microsome	GO:0005792	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	flavonoid 3'-monooxygenase activity	GO:0016711	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3		GO:0050381	Molecular Function	-
Sma3	response to bacterium	GO:0009617	Biological Process	-
Sma3	lignin biosynthetic process	GO:0009809	Biological Process	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	response to UV-B	GO:0010224	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002310011.1	predicted protein [Populus trichocarpa]	0.0	46%

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
232	33	66			0.997452
238		66		33	0.997452
295		25	75		0.996473
323		50	50		1.0
360		75		25	0.996473
381	25		75		0.996473
413	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain