SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene189411

Length: 360 nt

UniGene Fasta

>sp_v3.0_unigene189411
AGAATTACTCTCGAATTGGTATTTCAGTAGCAGCAATGGCAGGAGGAGCAATACCGTTTTCCCTAATGTTGTTGATGCGGGTTGCAGGAATGGTGGTGTTAATGTTGGTTCTGGTATGGATAATGCACTTTCGAGGAGGAATGGCACTTGGCTCTCACGACCTGGACCTCATTCGCAATGCACACCCGCTGATGCTAACTGGCTTCATATTGCTCAGCGGTGAAGCTATGTTGGTGTATAAGACAGCATTTGGAACGAGAAAGCACATGAATGCTCTGCACCTTGTGCTGCAAGCAATAGCTTTTGCCTCGGAATAAGTGGAATATGGGCTGCTTTTAAATTTCACAGTGACAAGGGTTT

Ace file of the UniGene sp_v3.0_unigene189411

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cytochrome b561 [Citrullus lanatus]	-	-	3.0e-14	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%

Source	Gene names
Sma3	GSVIVT00038165001; VITISV_001339;

Source	GOs	Term	Type	e value	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytochrome b561, eukaryote	IPR004877	-	0.0	-
Sma3	Cytochrome b561/ferric reductase transmembrane	IPR006593	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002311430.1	predicted protein [Populus trichocarpa]	1.0e-17	52%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADY3

Fln msg: Separated hits, possible frame ERROR between 302 and 308, Distance to subject end: 127 aas, your sequence is shorter than subject: 108 - 237

Fln protein: MAGGAIPFSLMLLMRVAGMVVLMLVLVWIMHFRGGMALGSHDLDLIRNAHPLMLTGFILLSGEAMLVYKTAFGTRKHMNALHLVLQAIxxxLGISGIWAAFKFHSDKG

Protein Length: 109

Fln nts: AGAATTACTCTCGAATTGGTATTTCAGTAGCAGCA_-_ATGGCAGGAGGAGCAATACCGTTTTCCCTAATGTTGTTGATGCGGGTTGCAGGAATGGTGGTGTTAATGTTGGTTCTGGTATGGATAATGCACTTTCGAGGAGGAATGGCACTTGGCTCTCACGACCTGGACCTCATTCGCAATGCACACCCGCTGATGCTAACTGGCTTCATATTGCTCAGCGGTGAAGCTATGTTGGTGTATAAGACAGCATTTGGAACGAGAAAGCACATGAATGCTCTGCACCTTGTGCTGCAAGCAATAGCxxxxxxCCTCGGAATAAGTGGAATATGGGCTGCTTTTAAATTTCACAGTGACAAGGGTTT

Fln Alignment:

AllPine_b_c25565___MAGGAIPFSXXXXXXXXXXXXXXXXXXXXXHFRGGMALGSHDLDLIRNAHP-LMLTGFILLSGEAMLVYKTAFGTRKHMNALHLVLQAIAxxLGISGIWAAFKFHSDKG
D5ADY3________________MAIPTVPFSLMLLVRFAGILAAMLVLTWVLHFRGGMALISDDKNLIFNVHPTLMLIGFILLSGEAMLVYKTVPGTKNYKKAVHLVLQGLAxxLAMIGIWAAYKFHNDKG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain