SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene189341

Length: 377 nt

UniGene Fasta

>sp_v3.0_unigene189341
TTTGGCTTCCGTCTCGGTAGGTGTATTATTCATCATTCTCCTAAAAGGACATTCATTCATCTATTTCTTCCCCGTCGACCACGACGACTGAAACGACGCGGCAGATCAAGAGGGCGACCGGTCTAGTTCCTGCACGAACACATTGTACAAGCCCAATTATTTATGTATGTCAGAGGCGTTGCACTCACTCTTGTTCGGTAACGAACGCGAGGACCGAAGCATGTGCAAGAAGCTCCGTTGGAAACCGGTATTTGTTTACTTAACTGAGTTAGAGTTCGGGAAGATATCAAATATACCTTATCTGAGCATAGCGAAGGGTCCTTTCAGGCGGTAAGGTCCTGCCCTTCTTGATAAGGGGGGGAAAGGTCTTGAGCTCA

Ace file of the UniGene sp_v3.0_unigene189341

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein S3 n=4 Tax=Pinaceae RepID=D2DWH7_9CONI	-	-	1.0e-05	100%
FL-Next	tr=Ribosomal protein S3; Abies holophylla (Neddle fir) (Manchurian fir). Mitochondrion.	-	-	0.0	100%
Sma3	Ribosomal protein S3	-	-	3.125e-39	-

Source	Gene names
Sma3	AtMg00090; LOC_Os12g34070; LOC_Os12g34130; RCOM_2145580; RPS3; YRPS3; rps3;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L16	IPR000114	-	-
Sma3	NADH:ubiquinone/plastoquinone oxidoreductase, chain 3	IPR000440	-	-
Sma3	Ribosomal protein S3, C-terminal	IPR001351	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3		IPR008282	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Ribosomal protein L10e/L16	IPR016180	-	-
Sma3	Ribosomal protein S14, conserved site	IPR018271	-	-
Sma3	Ribosomal protein S3, conserved site	IPR018280	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D2DWK1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 379 aas, your sequence is shorter than subject: 42 - 557

Fln protein: FGFRLGRCIIHHSPKRTFIHLFLPRRPRRLKRRGRSRGRPV*

Protein Length: 43

Fln nts: TTTGGCTTCCGTCTCGGTAGGTGTATTATTCATCATTCTCCTAAAAGGACATTCATTCATCTATTTCTTCCCCGTCGACCACGACGACTGAAACGACGCGGCAGATCAAGAGGGCGACCGGTCTAGTTCCTGCACGAACACATTGTACAAGCCCAATTATTTATGTATGTCAGAGGCGTTGCACTCACTCTTGTTCGGTAACGAACGCGAGGACCGAAGCATGTGCAAGAAGCTCCGTTGGAAACCGGTATTTGTTTACTTAACTGAGTTAGAGTTCGGGAAGATATCAAATATACCTTATCTGAGCATAGCGAAGGGTCCTTTCAGGCGGTAAGGTCCTGCCCTTCTTGATAAGGGGGGGAAAGGTCTTGAGCTCA

Fln Alignment:

AllPine_b_c24781___FGFRLGRCIIHHSPKRTFIHLF
D2DWK1________________FGFRLGRCIIHHSPKRTFIHLF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain