SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene189262

Length: 392 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene189262
GATACAAGACTCCAAAGGAAGCCATTACTGGAAATTACATTGATAAGAAATGCCCATTCACTGGAAACGTGAGCATTCGTGGAAGAATTTTGAAGGGTATTGTTGTTTCCACAAAAATGAAGAGAACCATTGTGATTAGAAGAGATTATCTCCATTACATCAGAAAGTACGACAGATTTGAGAAGAGACACAGAAACGTATCTGCTCACTGCTCCCCCGCTTTCAAGCTCAAGGATGGAGATATTGTCACAATTGGACAATGCAGACCTTTGTCAAAGACTGTTCGATTCAATGTCATCAAGGTTGAACCCCAGAAAATTACTGGTGGAAAGCAATTCAGACTCTTCTAAATTTGAAGCTCAAGTGTGCACCAATAAATCCAGTTTATTACT

Ace file of the UniGene sp_v3.0_unigene189262 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S11 [Plasmodium vivax SaI-1] ref\|XP_002258883.1\| 40s ribosomal protein s11 [Plasmodium knowlesi strain H] gb\|EDL44809.1\| 40S ribosomal protein S11, putative [Plasmodium vivax] emb\|CAQ39656.1\| 40s ribosomal protein s11, putative [Plas	-	-	9.80909e-45	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	40S ribosomal protein S11	-	-	4.581e-28	-

Source	Gene names
Sma3	At3g48930; At4g30800; At5g23740; CHLREDRAFT_180130; EMB1080; F6I18.290; GSVIVT00005647001; GSVIVT00032736001; MICPUCDRAFT_33883; MICPUN_81184; MRO11.22; OJ1112_E08.122; OJ1112_E08.123; OJ1773_H01.103; OJ1773_H01.104; OSIGBa0112M24.1; OSJNBa0070C17.19; OSJ

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S17	IPR000266	-	-
Sma3	Protein of unknown function DUF707	IPR007877	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G30800.1	Nucleic acid-binding, OB-fold-like protein chr4:15001216-15002392 FORWARD LENGTH=159	70%
RefSeq	Arabidopsis thaliana	NP_194809.1	40S ribosomal protein S11-2 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002301243.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN19

Fln msg: your sequence is shorter than subject: 116 - 160

Fln protein: YKTPKEAITGNYIDKKCPFTGNVSIRGRILKGIVVSTKMKRTIVIRRDYLHYIRKYDRFEKRHRNVSAHCSPAFKLKDGDIVTIGQCRPLSKTVRFNVIKVEPQKITGGKQFRLF*

Protein Length: 117

Fln nts: GATACAAGACTCCAAAGGAAGCCATTACTGGAAATTACATTGATAAGAAATGCCCATTCACTGGAAACGTGAGCATTCGTGGAAGAATTTTGAAGGGTATTGTTGTTTCCACAAAAATGAAGAGAACCATTGTGATTAGAAGAGATTATCTCCATTACATCAGAAAGTACGACAGATTTGAGAAGAGACACAGAAACGTATCTGCTCACTGCTCCCCCGCTTTCAAGCTCAAGGATGGAGATATTGTCACAATTGGACAATGCAGACCTTTGTCAAAGACTGTTCGATTCAATGTCATCAAGGTTGAACCCCAGAAAATTACTGGTGGAAAGCAATTCAGACTCTTCTAA___ATTTGAAGCTCAAGTGTGCACCAATAAATCCAGTTTATTACT

Fln Alignment:

AllPine_b_c24443___YKTPKEAITGNYIDKKCPFTGNVSIRGRILKGIVVSTKMKRTIVIRRDYLHYIRKYDRFEKRHRNVSAHCSPAFKLKDGDIVTIGQCRPLSKTVRFNVIKVEPQKITGGKQFRLF
A9NN19________________FKTPKEAVQGTYIDKKCPFTGNVSIRGRILAGTCYSAKMTRTIIVRRDYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGSAKKAF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain