SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene189061

Length: 953 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene189061

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GrpE protein homolog n=1 Tax=Picea sitchensis RepID=A9NWL2_PICSI	-	-	77%
FL-Next	sp=GrpE protein homolog; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Sma3	GrpE protein homolog	-	-	-

Source	Gene names
Sma3	AT4g26780; At4g26780; At4g26780/F10M23_120; At5g55200; CHLREDRAFT_132633; F10M23.120; GSVIVT00027261001; GrpE1; GrpE2; MCO15.15; MGE1; MICPUCDRAFT_7324; MICPUN_97757; OJ1190_B07.11; OSJNBa0009H03.28; OSJNBa0062G05.3; OSTLU_14947; Os08g0338700; Os09g028440

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	adenyl-nucleotide exchange factor activity	GO:0000774	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	chaperone binding	GO:0051087	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GrpE nucleotide exchange factor	IPR000740	-	-
Sma3	Flavodoxin-like fold	IPR003680	-	-
Sma3	Uncharacterised protein family UPF0041	IPR005336	-	-
Sma3	GrpE nucleotide exchange factor, head	IPR009012	-	-
Sma3	GrpE nucleotide exchange factor, coiled-coil	IPR013805	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G26780.1	AR192 Co-chaperone GrpE family protein chr4:13485066-13486560 REVERSE LENGTH=327	69%
RefSeq	Arabidopsis thaliana	NP_567757.1	molecular chaperone GrpE [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002321532.1	predicted protein, partial [Populus trichocarpa]	69%

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
187		50		50	1.0
227	50		50		1.0
252		60		40	1.0
559		57		42	1.0
561		42		57	1.0
562	42		57		1.0
570	57		42		1.0
589		42		57	1.0
610		62		37	1.0
613		37		62	1.0
614	12		87		0.992554
618	37		62		1.0
643	42			57	1.0
657		57	42		1.0
663	42		57		1.0
672	66			33	1.0
701	71		28		1.0
709		71	28		1.0
726	28			71	1.0
735		71		28	1.0
738	71			28	1.0
764			28	71	1.0
809			20	80	0.995497
827		25	75		0.996473
831			25	75	0.996473
834	25		75		0.996473
894			33	66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain