SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene188995

Length: 1093 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene188995 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zeatin O-glucosyltransferase n=1 Tax=Phaseolus lunatus RepID=ZOG_PHALU	-	-	0.0	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	UDP-glucosyltransferase, putative	-	-	2.10195e-44	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	6.4e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fructose and mannose metabolism	00051		6.4e-08	%
Sma3	N-Glycan biosynthesis	00510		6.4e-08	%
Sma3	Mucin type O-Glycan biosynthesis	00512		6.4e-08	%
Sma3	Various types of N-glycan biosynthesis	00513		6.4e-08	%
Sma3	Other types of O-glycan biosynthesis	00514		6.4e-08	%
Sma3	Biosynthesis of 12-, 14- and 16-membered macrolides	00522		6.4e-08	%
Sma3	Glycosaminoglycan biosynthesis - keratan sulfate	00533		6.4e-08	%
Sma3	Lipopolysaccharide biosynthesis	00540		6.4e-08	%
Sma3	Peptidoglycan biosynthesis	00550		6.4e-08	%
Sma3	Glycerolipid metabolism	00561		6.4e-08	%
Sma3	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563		6.4e-08	%
Sma3	Sphingolipid metabolism	00600		6.4e-08	%
Sma3	Glycosphingolipid biosynthesis - lacto and neolacto series	00601		6.4e-08	%
Sma3	Glycosphingolipid biosynthesis - globo series	00603		6.4e-08	%
Sma3	Glycosphingolipid biosynthesis - ganglio series	00604		6.4e-08	%
Sma3	Carotenoid biosynthesis	00906		6.4e-08	%
Sma3	Zeatin biosynthesis	00908		6.4e-08	%
Sma3	Flavonoid biosynthesis	00941		6.4e-08	%
Sma3	Anthocyanin biosynthesis	00942		6.4e-08	%
Sma3	Flavone and flavonol biosynthesis	00944		6.4e-08	%
Sma3	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945		6.4e-08	%
Sma3	Betalain biosynthesis	00965		6.4e-08	%
Sma3	Biosynthesis of type II polyketide products	01057		6.4e-08	%
Sma3	Metabolic pathways	01100		6.4e-08	%
Sma3	Biosynthesis of secondary metabolites	01110		6.4e-08	%
Sma3	Anthocyanidin 3-O-glucosyltransferase.	EC:2.4.1.115	-	1.62701e-40	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Anthocyanin biosynthesis	00942		1.62701e-40	%
Sma3	Metabolic pathways	01100		1.62701e-40	%
Sma3	Biosynthesis of secondary metabolites	01110		1.62701e-40	%
Sma3	Trans-zeatin O-beta-D-glucosyltransferase.	EC:2.4.1.203	-	2.766e-10	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Zeatin biosynthesis	00908		2.766e-10	%
Sma3	Cis-zeatin O-beta-D-glucosyltransferase.	EC:2.4.1.215	-	1.274e-06	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Zeatin biosynthesis	00908		1.274e-06	%

Source	Gene names
Sma3	4'CGT; AOG; AT4g34130; A_IG002N01.15; AdGt-1; AdGt-13; AdGt-14; AdGt-3; AdGt-8; AdGt-9; AmUGT21; AmUGT38; At2g15480; At2g15490; At2g29710; At2g36750; At2g36760; At2g36770; At2g36780; At2g36790; At2g36800; At3g50740; At4g01070; At4g34120; At4g34120/F28A23.

Source	GOs	Term	Type	Identity
Sma3	nuclear pore	GO:0005643	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	glucuronosyltransferase activity	GO:0015020	Molecular Function	-
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	-
Sma3	anthocyanin 3'-O-beta-glucosyltransferase activity	GO:0033837	Molecular Function	-
Sma3	UDP-glucosyltransferase activity	GO:0035251	Molecular Function	-
Sma3	coniferyl-alcohol glucosyltransferase activity	GO:0047209	Molecular Function	-
Sma3	anthocyanidin 3-O-glucosyltransferase activity	GO:0047213	Molecular Function	-
Sma3	flavonol 3-O-glucosyltransferase activity	GO:0047893	Molecular Function	-
Sma3	trans-zeatin O-beta-D-glucosyltransferase activity	GO:0050403	Molecular Function	-
Sma3	zeatin O-beta-D-xylosyltransferase activity	GO:0050404	Molecular Function	-
Sma3	cis-zeatin O-beta-D-glucosyltransferase activity	GO:0050502	Molecular Function	-
Sma3	hydroquinone glucosyltransferase activity	GO:0050505	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to toxin	GO:0009636	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	lignin metabolic process	GO:0009808	Biological Process	-
Sma3	response to UV-B	GO:0010224	Biological Process	-
Sma3	brassinosteroid metabolic process	GO:0016131	Biological Process	-
Sma3	xenobiotic catabolic process	GO:0042178	Biological Process	-
Sma3	flavonol biosynthetic process	GO:0051555	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor, fork head	IPR001766	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	Nucleoporin interacting component Nup93/Nic96	IPR007231	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3		IPR018115	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G34135.1	UGT73B2 UDP-glucosyltransferase 73B2 chr4:16345476-16347016 REVERSE LENGTH=483	48%
RefSeq	Arabidopsis thaliana	NP_567954.1	UDP-glucosyltransferase 73B2 [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002322723.1	predicted protein [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPQ9

Fln msg: your sequence is shorter than subject: 239 - 469

Fln protein: WTATKDSTSSDVESCLKWLDAQHPASVVYVSFGSTSSLTRQQLQELARGLEATQRSFLWVVRVADSARFTASDEARMDWISELLPEGYERRIAGRGFLVRNWAPQLDILAHKATGGFVTHCGWNSTLESISAGVPMVAWPLHSDQFANSILVARELKVGVEVKKWTKADETELVMAEEVEKAIGRVMGEDGEGVEMRRRAKELRLAAQRAVAEGGSSWKELESFINHFTSKLNEQSND*

Protein Length: 240

Fln nts: TGGACTGCTACGAAGGATAGTACTAGTTCGGATGTTGAAAGTTGCTTGAAATGGTTGGACGCGCAACATCCGGCTTCGGTTGTTTATGTTTCCTTCGGTTCAACCTCTTCTTTAACGAGGCAACAACTTCAAGAATTGGCTAGAGGGTTGGAGGCGACTCAGCGGTCGTTTCTTTGGGTTGTTAGGGTCGCGGACAGCGCCCGTTTCACGGCGTCGGATGAAGCGCGGATGGATTGGATTAGCGAGCTGCTTCCGGAAGGGTATGAGCGGAGAATTGCTGGACGCGGGTTTTTGGTGAGAAACTGGGCTCCCCAACTTGATATCCTAGCGCATAAGGCCACGGGAGGGTTTGTAACGCACTGTGGATGGAATTCGACGTTGGAAAGCATCAGCGCTGGGGTTCCCATGGTGGCTTGGCCTCTGCATTCCGACCAATTTGCGAACTCGATTCTGGTGGCCAGGGAGCTGAAGGTGGGCGTGGAAGTGAAGAAGTGGACGAAGGCGGATGAGACTGAGTTGGTGATGGCGGAGGAGGTGGAGAAGGCGATTGGGCGAGTGATGGGGGAAGATGGAGAGGGAGTGGAAATGAGGAGGAGGGCCAAGGAACTTAGATTGGCAGCCCAGAGGGCCGTGGCAGAGGGAGGATCGTCGTGGAAGGAGTTGGAGTCGTTTATCAATCATTTTACTTCAAAACTGAATGAACAAAGTAATGATTGA___GAGCGTTGGTGGCTATGCTCAGGATTTTGCTTCTCACATATGCAAAATCCTTCTTCAGGGAAAGGGGTTCAAAGTCTTCTTCTGTATCACCAGTGGAAACTAGATTAGATATTTATGGTTGTAAAATTTCTAAACATTTGTTCTATTATAATAATAACGGCATTCCATGGAAAGACACTGGGTTATCTTTCACTATTGCCAAGCCGCTCCAGTATAATCTGATATTGCTAAATGGCTGAAGTATAATCTGATAATGGGTAATTTTCCCCTTATTCCAAATGGCCTAGTGTAATCTTCCCTGACGATTGAGTGCAGAGGATTTATGGCAGTTTTGAATCTATGAACACAAACTTTGAAACATGGAAAAATTGGATAC

Fln Alignment:

AllPine_b_c22695___WTATKDSTSSDVESCLKWLDAQHPASVVYVSFGSTSSLTRQQLQELARGLEATQRSFLWVVRVADSARFTASDEARMDWISELLPEGYERRIAGRGFLVRNWAPQLDILAHKATGGFVTHCGWNSTLESISAGVPMVAWPLHSDQFANSILVARELKVGVEVKKWTKADETELVMAEEVEKAIGRVMGEDGEGVEMRRRAKELRLAAQRAVAEGGSSWKELESFINHFTSKLNEQSND
B8LPQ9________________WTAKKGSTSSDVESCLRWLDGQHPASVLYVSFGSASSLSRQQLQELARGLEASQRSFLWVVRVADSARFTASDEARMDWISELLPEGYEGRIAGRGFLVRNWAPQLDILSHKATGGFVTHCGWNSTLESISAGVPMVTWPLHSDQFANSILVARELKVGVEVKKWTKADENELVMAEEVEKAIGRLMAEDGEGLEIRSRAKELGLAARRAVAEGGSSFKELESFIHHFTSILDERNND

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
207			50	50	1.0
268			25	75	0.996478
437		20		80	0.995493
439	20	80			0.995493
448		80		20	0.995496
469		80		20	0.995493
478			33	66	0.997452
483	75	25			0.996474
486		25		75	0.996473
546		50		50	1.0
627	33			66	1.0
636		50	50		1.0
719	33	66			1.0
818	66	33			0.997452
826			33	66	0.997452
827	50	50			1.0
829	33	33	33		0.997753
848	33	66			0.997452
853		66		33	0.997452
908	33		66		0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain