SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene188797

Length: 1187 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene188797

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AP2 domain class transcription factor n=1 Tax=Malus x domestica RepID=D5L0Z9_MALDO	-	-	3.0e-22	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	AP2/ERF domain-containing transcription factor	-	-	4.604e-30	-

Source	Gene names
Sma3	ABR1; AP2DCP; AT1G53910; At1g43160; At1g53910; At1g72360; At2g33710; At2g47520; At3g14230; At3g16770; At4g34410; At5g07310; At5g13330; At5g50080; At5g61890; At5g64750; B1011A07.39; B1045B05.13; B1056G08.120; BIERF1; BIERF3; BIERF4; C635ERIPDM; CDBP; CEF1;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	phosphatidylinositol phospholipase C activity	GO:0004435	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	cadmium ion binding	GO:0046870	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to osmotic stress	GO:0006970	Biological Process	-
Sma3		GO:0007242	Biological Process	-
Sma3	response to glucose stimulus	GO:0009749	Biological Process	-
Sma3	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Phospholipase C, phosphatidylinositol-specific, Y domain	IPR001711	-	-
Sma3		IPR004348	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G47520.1	HRE2 Integrase-type DNA-binding superfamily protein chr2:19502891-19503490 REVERSE LENGTH=171	9.0e-19	64%
RefSeq	Arabidopsis thaliana	NP_182274.1	ethylene-responsive transcription factor ERF071 [Arabidopsis thaliana]	1.0e-18	64%
RefSeq	Populus trichocarpa	XP_002331217.1	AP2/ERF domain-containing transcription factor [Populus trichocarpa]	2.0e-19	69%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWS1

Fln msg: Separated hits, possible frame ERROR between 370 and 504, Unexpected STOP codon at 3' end. Distance to subject end: 111 aas, your sequence is shorter than subject: 187 - 419

Fln protein: MCGGAIIADFIAANRPRRVTARELWPGFDAFAEFINGGGVQETFNKPGKLDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGRKRKNVYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFNTAEEAARAYDAAAKRIRGKKAKLNFADNSCSVKNDTSEKVSGKKGKLCFH*

Protein Length: 188

Fln nts: ATTGTAACATTTGGGCGTCCCTGGCCTCCTAAGACTATATAAGCCTTACCAGAAGCTAATGGTTTCAGCTGAGAGGGTGGTCTAAGAGCCGATAGTTTGTTTTTAAGTGGTGGTTTTTTCTCGATATTTTCCCTGAATAGAAGCGGTTTCGATTCCTGCTGAAGGCAGCAGCAGCTGGTTTGAAAGCAGCAGCAGCGGTTTTGGAAACAAAACA_-_ATGTGTGGAGGTGCCATTATCGCGGATTTCATTGCCGCCAATCGACCTCGGCGTGTAACTGCTAGGGAGCTGTGGCCGGGTTTCGACGCGTTCGCTGAATTCATCAATGGCGGAGGAGTGCAGGAAACCTTCAATAAACCTGGCAAGTTGGACGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGCGGGGCGGAAGAGAAAGAATGTATACAGAGGTATCAGACAGCGTCCATGGGGAAAATGGGCTGCGGAGATTAGAGATCCCAGTAAGGGTGTTAGGGTTTGGCTTGGAACGTTCAACACGGCAGAGGAGGCCGCCAGGGCCTATGATGCAGCGGCTAAAAGGATCCGAGGTAAGAAAGCTAAGCTAAATTTTGCTGATAACTCGTGTTCTGTTAAAAATGACACTAGCGAGAAAGTGTCAGGGAAGAAAGGAAAGTTGTGTTTCCACTGATGGCCTTAGAATTCACTGATCAAGTTCATTAGGGTAGGCCCGCAGTTGATTGCTATCCTCTCAATGATTAGTGCAGGGAACTTCAACTTTAAACTAGGATAAATATTAATAAAATATCATCATCCCTTTCAAACTTTCAAGTCACGGAAGGTTGTCCATGCATGCTATAATAGCCATTCAAGTCTGTCATTTCAATTTCCAATGAATACAAATTGGTGTTGTCTCTATTGTAATGATTTGGCAGAACTGACACAATTAATATCTTAATGACTTATGAGGAATGGATATGTGGACATCTTTTATTTATATGGACACATCACTAGCCAACTCGATCCATGAGCTGGGCATTATTGGTTTTCTGTTATTTTTCATTGGGATGGTCCATTAAAAATCATCATTTTTGGTTGGCTTACC

Fln Alignment:

AllPine_b_c22060___MCGGAIIADFIA--ANRPRRVTARELWPGFDAFAEFINGGGVQETFNKPGKLDExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGRKRKNVYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFNTXXXXXXXXXXXXXXXXXXXXXLNFADNSCSVKNDT-----SEKVSGKKGKLC
A9NWS1________________MCGGAIISDFIIPPANRGRRVTARDIWPDFDKFSEFINGGAPVETFDVSVNVDDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGRKRKNLYRGIRQRPWGKWAAEIRDPRKGARVWLGTFNTAEEAARAYDAAARKIRGKKAKVNFVDEPPPIKKETNNGKGSRKESSKKIKSC

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
109			33	66	0.99944
131		50		50	1.0
593			25	75	0.996473
1000	11			88	0.991528
1059		16		83	0.994514

SSRs (tot: 1)

Start position	End position	Sequence	Length
185	196	AGC AGC AGC AGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain