SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene188733

Length: 424 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene188733
GATACGGGGGGGACTTGAAAAGCAAATGTCGTGGCAATCATACGTCGATAATCTTGTTGCAGGAGGACATTGTACCAACGGAGCCATCCTCGGCCTCGATGGATCTACTGGGCCAGTAACGTTCCTTTCAAGGGAAACGAAGCCGCGACCATTGCCTCAGTTTTCAAGAATCCTCAAAGCGCCTTCTCTGCCAGCATCACCATCAATGGTGAAAAGCATTTTGCCCTGAAGTCGGACGGAGAATCCTTCTACGCCAAGAAGGGAACCTCTGGATTCTCTGCTGCTAAATCTGGCCAAGCCATAGTCGTTGGTCTCTACAATGACAAGACCCAACCTGGAAATAACTCCAACGCTGTTGAGAAAATGGCCTCGTACCTCCGTGATAACGGTTACTAAACTGTGATAATAAATCTACCCTAACACC

Ace file of the UniGene sp_v3.0_unigene188733 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Profilin-P n=1 Tax=Physarum polycephalum RepID=PROF2_PHYPO	-	-	1.0e-22	47%
FL-Next	sp=Profilin; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMR7

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 60 aas, putative chimeric sequence, No stop codon before M and low homology subject, your sequence is shorter than subject: 68 - 132

Fln protein: MSWQSYVDNLVAGGHCTNGAILGLDGSTGPVTFLSRETKPRPLPQFSRILKAPSLPASPSMVKSILP*

Protein Length: 69

Fln nts: GATACGGGGGGGACTTGAAAAGCAA_-_ATGTCGTGGCAATCATACGTCGATAATCTTGTTGCAGGAGGACATTGTACCAACGGAGCCATCCTCGGCCTCGATGGATCTACTGGGCCAGTAACGTTCCTTTCAAGGGAAACGAAGCCGCGACCATTGCCTCAGTTTTCAAGAATCCTCAAAGCGCCTTCTCTGCCAGCATCACCATCAATGGTGAAAAGCATTTTGCCCTGAAGTCGGACGGAGAATCCTTCTACGCCAAGAAGGGAACCTCTGGATTCTCTGCTGCTAAATCTGGCCAAGCCATAGTCGTTGGTCTCTACAATGACAAGACCCAACCTGGAAATAACTCCAACGCTGTTGAGAAAATGGCCTCGTACCTCCGTGATAACGGTTACTAAACTGTGATAATAAATCTACCCTAACACC

Fln Alignment:

AllPine_b_c21911___MSWQSYVD-----NLVAGGHCTNGAILGLDGS
A9NMR7________________MSWQTYVDEHLMCDLSNGSRLSSAAIYGHDGT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain