SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene188490

Length: 491 nt

UniGene Fasta

>sp_v3.0_unigene188490
TTGGATACAAGCCCGCCAAGATCCCTTTCGTTCCAATCTCCGGCTGGGTCGGAGACAACATGATTGACCGATCTACAAACATGGCTTGGTACAAGGGTCCTATCCTTCTAGAAGCTCTTAGATGGTGTCCAACCACCAGAGAGACCAACTGGCAAGCCACTTCGTCTTCCTCTTCAAGACGTGTACAAGATCGGTGGTATCGGCACAGTCCCAGTCGGACGAGTTGAAACCGGTGTCCTTAAGCCAAACATGGTTGTCACTTTCGGCCCAATTGGTTTGACCACTGAAGTCAAGTCTGTCGAAATGCATCACGAATCTTTGGCCGAAGCTGTCCCAGGAGACAACGTCGGATTCAACTGCAAGAACGTGTCCGTCAAGGACATCAAGAGAGGTTACGTCGCCTCCAACTCTGCTGAAGATCCTGCCAAGGGAGTTGAGTCCTTCACTGCTCAAGTGATCATCATGTCTCACCCTGGTCAAATCCAAAACGG

Ace file of the UniGene sp_v3.0_unigene188490

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Elongation factor 1-alpha (Fragment) n=2 Tax=stramenopiles RepID=Q2TTF1_9STRA	-	-	0.0	89%
FL-Next	sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Elongation factor 1-alpha	-	-	8.709e-16	-

Source	Gene names
Sma3	BLT63; EF-1alpha; EF1A; Tef1; tef1;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	translational elongation	GO:0006414	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation elongation factor EF1A, eukaryotic/archaeal	IPR004539	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G60390.1	GTP binding Elongation factor Tu family protein chr5:24289226-24290675 FORWARD LENGTH=449	73%
RefSeq	Arabidopsis thaliana	NP_001032107.1	Elongation factor 1-alpha [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002326338.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUF4

Fln msg: Overlapping hits, possible frame ERROR between 119 and 118, Distance to subject end: 103 aas, your sequence is shorter than subject: 163 - 447

Fln protein: GYKPAKIPFVPISGWVGDNMIDRSTNMAWYKGPILLEAxxDGVQPPERPTGKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPNMVVTFGPIGLTTEVKSVEMHHESLAEAVPGDNVGFNCKNVSVKDIKRGYVASNSAEDPAKGVESFTAQVIIMSHPGQIQN

Protein Length: 164

Fln nts: TTGGATACAAGCCCGCCAAGATCCCTTTCGTTCCAATCTCCGGCTGGGTCGGAGACAACATGATTGACCGATCTACAAACATGGCTTGGTACAAGGGTCCTATCCTTCTAGAAGCTxxxxxxGATGGTGTCCAACCACCAGAGAGACCAACTGGCAAGCCACTTCGTCTTCCTCTTCAAGACGTGTACAAGATCGGTGGTATCGGCACAGTCCCAGTCGGACGAGTTGAAACCGGTGTCCTTAAGCCAAACATGGTTGTCACTTTCGGCCCAATTGGTTTGACCACTGAAGTCAAGTCTGTCGAAATGCATCACGAATCTTTGGCCGAAGCTGTCCCAGGAGACAACGTCGGATTCAACTGCAAGAACGTGTCCGTCAAGGACATCAAGAGAGGTTACGTCGCCTCCAACTCTGCTGAAGATCCTGCCAAGGGAGTTGAGTCCTTCACTGCTCAAGTGATCATCATGTCTCACCCTGGTCAAATCCAAAACGG

Fln Alignment:

AllPine_b_c21349___GYKPAKIPFVPISGWVGDNMIDRSTNMAWYKGPILLEAxDGVQPPERPTGKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPNMVVTFGPIGLTTEVKSVEMHHESLAEAVPGDNVGFNCKNVSVKDIKRGYVASNSAEDPAKGVESFTAQVIIMSHPGQIQN
A9NUF4________________GYNPDKIPFVPISGFEGDNMIERSNNLDWYKGPTLLEAxDQVSEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGTIVTFGPTGLTTEVKSVEMHHEALQEAYPGDNVGFNVKNVAVKDLKRGYVASDSKNDPAKEVANFTAQVIIMNHPGQIGN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain