SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene188462

Length: 813 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene188462

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sarco/endoplasmic reticulum calcium transporting ATPase n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9CFE6_9EUKA	-	-	0.0	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	Endoplasmic reticulum [ER]-type calcium ATPase	-	-	3.276e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Calcium-transporting ATPase.	EC:3.6.3.8	-	3.687e-24	-

Source	Gene names
Sma3	ACA3; ACA5; ACA6; AT1G10130; A_TM018A10.4; At1g07670; At1g07810; At1g10130; At4g00900; CA1; CA5; CA6; CA7; CHLREDRAFT_77047; ECA1; ECA2; ECA3; ECA4; F14N23.1; F24B9.9; GSVIVT00008659001; GSVIVT00014975001; GSVIVT00023099001; GSVIVT00024422001; LCA1; LOC_O

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	endomembrane system	GO:0012505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	integral to endoplasmic reticulum membrane	GO:0030176	Cellular Component	-
Sma3	late endosome membrane	GO:0031902	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	calcium-transporting ATPase activity	GO:0005388	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	manganese-transporting ATPase activity	GO:0015410	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	cation transport	GO:0006812	Biological Process	-
Sma3	calcium ion transport	GO:0006816	Biological Process	-
Sma3	manganese ion transport	GO:0006828	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	manganese ion homeostasis	GO:0055071	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	ATPase, P-type, H+ transporting proton pump	IPR000695	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	ATPase, P-type, calcium-transporting	IPR005782	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type cation exchange, alpha subunit	IPR006069	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G10130.1	ECA3, ATECA3 endoplasmic reticulum-type calcium-transporting ATPase 3 chr1:3311139-3321941 FORWARD LENGTH=998	62%
RefSeq	Arabidopsis thaliana	NP_563860.1	Ca2+-transporting ATPase [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002320682.1	endoplasmic reticulum [ER]-type calcium ATPase [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEI1

Fln msg: Separated hits, possible frame ERROR between 367 and 486, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 266 - 340

Fln protein: AR*GQFATVFCVVEQGRAIYNNTKQFIRYLISSNIGEVVCIFLTAALGMP*ALVPVQLLWVNLVTDGLPATALGFNPPESDLMSRTPRGKDDPIINGWTFLRYIIIGTYVGFATVGGFGYWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTIALSVLVTIEMFNALNSVSENQSMLTMPPFVNMWLIGAVMLSFALHFAILYIPFFASVFGAAPLGWGEWKIVLAFSAPVIIIDEVLKLFSRLLKPDQKLKKD*

Protein Length: 267

Fln nts: TGCTCGCTGAGGGCAATTCGCCACGGTCTTCTGCGTCGTGGAGCAGGGCCGCGCGATCTACAACAACACCAAGCAGTTCATCCGCTACCTCATCTCGTCCAACATCGGCGAGGTCGTCTGCATCTTCCTCACCGCCGCGCTCGGCATGCCCTAGGCGCTCGTGCCCGTGCAGCTCCTCTGGGTCAACCTCGTCACCGACGGTCTCCCCGCCACCGCGCTTGGCTTCAACCCGCCCGAGTCCGACCTCATGTCCCGCACGCCGCGCGGCAAGGACGACCCGATCATCAACGGCTGGACCTTCCTGCGCTACATCATCATCGGCACCTACGTCGGCTTCGCCACCGTGGGCGGCTTCGGCTACTGGTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGACCATTGCGCTGTCGGTGCTCGTCACCATCGAGATGTTCAACGCGCTCAACTCGGTGTCCGAGAACCAGAGCATGCTCACCATGCCCCCGTTCGTCAACATGTGGCTCATCGGCGCCGTGATGCTGTCCTTCGCGCTCCACTTCGCCATCCTCTACATCCCCTTCTTCGCCTCCGTTTTCGGCGCCGCCCCTCTCGGCTGGGGCGAGTGGAAGATCGTGCTGGCGTTCTCCGCGCCGGTCATCATCATCGACGAGGTGCTCAAGCTCTTCTCGCGCCTCCTCAAGCCGGACCAGAAGCTCAAGAAGGACTGAGCGTGCGCGTGAGATT

Fln Alignment:

AllPine_b_c21303___FATVFCVVEQGRAIYNNTKQFIRYLISSNIGEVVCIFLTAALGMP*ALVPVQLLWVNLVTDGLPATALGFNPPESDLMSRTPRGKDDPIINGWTFLRYIIIGTYVGFATVGGFGYWFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTIALSVLVTIEMFNALNSVSENQSMLTMPPFVNMWLIGAVMLSFALHFAILYIPFFASVFGAAPLGWGEWKIVLAFSAPVIIIDEVLKLFSR
D5AEI1________________FSSIVAAVAEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGMPEGLIPVQLLWVNLVTDGPPATALGFNPPDVDIMKKPPRRSNDSLIDAWVLFRYLVIGLYVGLATVGIFAIWYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTLSLSVLVAIEMFNSLNALSEDGSLVVMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGIVPLSLNEWLLVLAVSLPVILIDETLKFFGR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain