SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene188400

Length: 542 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene188400
TTGCCACCAAGACCGGAAAATCCAAGCCAATCGAAAGACCAGGACTTACCGAAGACGAGATCGAAGAAATCAGAGAAGCCTTCAATCTCTTCGATACCGACAATTCCGGAACCATCGATCCAAAGGAACTCAAGGCCGCCATGCAATCACTCGGTTTCGAATCTAAGAACCCAACCATCTATCAAATGATCGCTGATCTTGAAAACGAAGGACCATCTATTGACTTCGATACCTTCTTGAGAGCCATTACTGATAAACTCGGTGACAAGGAAACCAAGGGCGGTATTAAGAAGATCTTCGAACTCTTCGACGATGACAATTCAGGAGCCATCAACTTGAACAACCTTAAGAGAGTTGCCAAGGAACTCGGTGAAACAATGACTAATGATGAATTGAAGGAAATGCTCGAAAGAGCCGCTGCTGATGGTGCTGAGATCTCCTTCGATGACTTTTATAATATAATGACTAAGAAAGCCTTCTAAATGTAGCAATACATAACATTATTTTGTTAAAAATTTATTTGTGCCATTATATCACCTCCT

Ace file of the UniGene sp_v3.0_unigene188400 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Centrin [Paramecium tetraurelia strain d4-2] ref\|XP_001422974.1\| hypothetical protein [Paramecium tetraurelia strain d4-2] emb\|CAH03655.1\| Centrin, putative [Paramecium tetraurelia] emb\|CAI38936.1\| centrin-related-protein,putative [Paramecium tetraurelia]	-	-	0.0	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Sma3	Centrin	-	-	1.916e-31	-

Source	Gene names
Sma3	At3g50360; CEN1; CEN2; CHLREDRAFT_159554; CML13; CML20; F11C1.200; LOC_Os07g42660; MICPUCDRAFT_49514; MICPUN_90289; MvCen1; OSTLU_31762; Odcen; Os07g0618800; OsI_26889; OsJ_25146; P0552F09.133; P0560B08.106; PHYPADRAFT_128401; PHYPADRAFT_233973; PHYPADRAF

Source	GOs	Term	Type	Identity
Sma3	centrosome	GO:0005813	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	bacterial-type flagellum	GO:0009288	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	ciliary or flagellar motility	GO:0001539	Biological Process	-
Sma3	mitosis	GO:0007067	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G50360.1	ATCEN2, CEN1, CEN2 centrin2 chr3:18674421-18675502 FORWARD LENGTH=169	9.00054e-42	45%
RefSeq	Arabidopsis thaliana	NP_190605.1	putative calcium-binding protein CML20 [Arabidopsis thaliana]	9.99967e-42	45%
RefSeq	Populus trichocarpa	XP_002307263.1	predicted protein [Populus trichocarpa]	3.99931e-42	47%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNV3

Fln msg: atg_distance in limit (1-15): atg_distance = 12, W2: There is no M at the beginning,

Fln protein: ATKTGKSKPIERPGLTEDEIEEIREAFNLFDTDNSGTIDPKELKAAMQSLGFESKNPTIYQMIADLENEGPSIDFDTFLRAITDKLGDKETKGGIKKIFELFDDDNSGAINLNNLKRVAKELGETMTNDELKEMLERAAADGAEISFDDFYNIMTKKAF*

Protein Length: 161

Fln nts: TTGCCACCAAGACCGGAAAATCCAAGCCAATCGAAAGACCAGGACTTACCGAAGACGAGATCGAAGAAATCAGAGAAGCCTTCAATCTCTTCGATACCGACAATTCCGGAACCATCGATCCAAAGGAACTCAAGGCCGCCATGCAATCACTCGGTTTCGAATCTAAGAACCCAACCATCTATCAAATGATCGCTGATCTTGAAAACGAAGGACCATCTATTGACTTCGATACCTTCTTGAGAGCCATTACTGATAAACTCGGTGACAAGGAAACCAAGGGCGGTATTAAGAAGATCTTCGAACTCTTCGACGATGACAATTCAGGAGCCATCAACTTGAACAACCTTAAGAGAGTTGCCAAGGAACTCGGTGAAACAATGACTAATGATGAATTGAAGGAAATGCTCGAAAGAGCCGCTGCTGATGGTGCTGAGATCTCCTTCGATGACTTTTATAATATAATGACTAAGAAAGCCTTCTAA___ATGTAGCAATACATAACATTATTTTGTTAAAAATTTATTTGTGCCATTATATCACCTCCT

Fln Alignment:

AllPine_b_c21169___GLTEDEIEEIREAFNLFDTDNSGTIDPKELKAAMQSLGFESKNPTIYQMIADLENEGP-SIDFDTFLRAITDKLGDKETKGGIKKIFELFDDDNSGAINLNNLKRVAKELGETMTNDELKEMLERAAADG-AEISFDDFYNIMTK
B8LNV3________________GLTDQKRQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQIRQMIADVDKDGSGTIDFDEFAYMMTAKIGERDSREELTRAFREIDQDKNGKISAADIQRMARELGESFSAEEIYEMIDEADRNGDGEVDPDEFLKMMKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain