SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene188307

Length: 176 nt

UniGene Fasta

>sp_v3.0_unigene188307
GGCTTACAAGATACAATCGCTTTGCCTCCTCCACCTCTTGATCTTCTGGATTTGCCCTCTAATTCTGCTTATAAGAATGGTGATTCTGGAAATCGCATAAGGAGCTTTCCGCATGTAGAAGGCAATTATGCACTTCATGTATATATCCCAGTTAACATATCATCTATTGCCGAAAA

Ace file of the UniGene sp_v3.0_unigene188307

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HVSL domain containing protein	-	-	4.0e-11	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%

Source	Gene names
Sma3	POPTRDRAFT_575515;

Source	InterPros	Term	Type	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Uncharacterised protein family UPF0406	IPR019146	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LM70

Fln msg: Distance to subject end: 196 aas, your sequence is shorter than subject: 58 - 388

Fln protein: GLQDTIALPPPPLDLLDLPSNSAYKNGDSGNRIRSFPHVEGNYALHVYIPVNISSIAE

Protein Length: 59

Fln nts: GGCTTACAAGATACAATCGCTTTGCCTCCTCCACCTCTTGATCTTCTGGATTTGCCCTCTAATTCTGCTTATAAGAATGGTGATTCTGGAAATCGCATAAGGAGCTTTCCGCATGTAGAAGGCAATTATGCACTTCATGTATATATCCCAGTTAACATATCATCTATTGCCGAAAA

Fln Alignment:

AllPine_b_c20926___KNGDSGNRIRSFPHVEGNYALHVYIPVNISSIAE
B8LM70________________KDVDSGNRIRSFPSVDGNYSLHVYIPVKISSIAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain