SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene188041

Length: 1177 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene188041 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxidase 72, putative n=1 Tax=Ricinus communis RepID=B9S693_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Sma3	Peroxidase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Phenylalanine metabolism	00360	%
Sma3	Methane metabolism	00680	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AP22.54; AoPOX1; At1g44970; At2g18140; At2g18150; At2g35380; At3g50990; At4g08770; At4g36430; At5g05340; At5g06720; At5g06730; At5g66390; C7A10.930; CEVI-1; DIDI 6G-3B; Ep; F24M12.30; F27F5.6; F8D23.7; F8D23.8; FBP5; GSVIVT00014550001; GSVIVT00015159001;

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	GCN5-like 1	IPR009395	-	-
Sma3	Thymidylate kinase, conserved site	IPR018095	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G66390.1	Peroxidase superfamily protein chr5:26516063-26517329 REVERSE LENGTH=336	69%
RefSeq	Arabidopsis thaliana	NP_201440.1	peroxidase 72 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002310274.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPA0

Fln msg: your sequence is shorter than subject: 211 - 344

Fln protein: VSCADILAIASRDSVVLSGGLGWEVLLGRRDSKSASLSGSNNNIPAPNSTLQTLTTKFKLQGLDEVDLVALSGSHTIGLSRCTSFRQRLYNQSGNGLPDFTLNRAYYARLKSGCPKSGGDNNLFPLDFVTPTKFDNYYFKNLLSGQGLLNTDEELFAKGQGKTKELVKLYAANEELFLKQFALSMVKMGNIKPLTGTMGEIRVNCRKVNS*

Protein Length: 212

Fln nts: TGTATCGTGTGCAGATATTCTCGCTATTGCATCTCGTGATTCAGTGGTCCTGAGTGGAGGGCTGGGCTGGGAAGTTTTACTGGGGAGGAGAGATTCGAAGAGTGCAAGTTTGAGTGGGTCCAACAACAATATCCCGGCGCCCAACTCAACTCTGCAGACGCTTACTACCAAGTTCAAACTACAAGGTCTAGATGAGGTAGACTTGGTGGCCCTTTCAGGGAGTCACACCATCGGCCTATCTCGATGCACAAGTTTCAGGCAGAGGCTTTACAACCAGAGTGGAAATGGGCTGCCAGACTTCACTCTAAACAGGGCTTACTATGCTCGGCTGAAATCCGGATGTCCAAAATCTGGAGGAGATAATAACTTGTTCCCATTGGATTTTGTGACTCCTACCAAATTCGATAACTACTACTTCAAGAACTTGCTGAGCGGTCAAGGGCTGTTGAACACAGACGAGGAATTGTTCGCAAAGGGCCAAGGGAAGACGAAGGAACTAGTGAAACTTTATGCAGCAAATGAGGAGCTCTTTCTCAAACAGTTTGCATTATCTATGGTGAAGATGGGAAACATCAAGCCTCTTACAGGCACCATGGGAGAAATCAGGGTCAACTGTCGTAAGGTTAACAGTTGA___TCAGTACGTTAATTTAATATTCATTTCCAACGTTTGTATTGCATTGTATAGCAGCCCCCTTGTAGCTACCATTCCCTGCATTCAGTACTTGTCACGGCTTGAATAAAACTTTCCCCATTGAAATATTGAAGTTATATTAGTAGATCAGTGAAATATTGAAGTTATATTAGTAGATAATCCTTCCCTGCATTCGGTTGTCACCGCTTGAATAAAACTACTTCCAGTGAAATATTGAAGTTCTCTTACTAGATAATCCTTCCCTGCATTCAGTTGTCACGGCTTGAATAAAATTACCGCCAGTGAAATATTGAAGTTGTATTACTAGATAATCCCTCCTGCATTCAGTTATCATGGCTTGAATAAAACTACCGCCAGTGAGTTATTGAAGTTCTAATAGGGTCAGAAAATAGAGGGAGACATCAGCGTCCACTTGAAATTGCCATGTAAGAAGCATATCTACATAATCGAATCAGTACGGCTTAATATGCTGTTTCATACCAAGAATCTTTGAGAAAAAATCATAATCGATTTCCCTGCTGTCAC

Fln Alignment:

AllPine_b_c20206___VSCADILAIASRDSVVLSGGLGWEVLLGRRDSKSASLSGSNNNIPAPNSXXXXXXXXXXXXXLDEVDLVALSGSHTIGLSRCTSFRQRLYNQSGNGLPDFTLNRAYYARLKSGCPKSGGDNNLFPLDFVTPTKFDNYYFKNLLSGQGLLNTDEELFAKGQGKTKELVKLYAANEELFLKQFALSMVKMGNIKPLTGTMGEIRVNCRKVNS
B8LPA0________________VSCADILAISVRDSVVLRGGLGWEVLLGRRDSKSASLSGSNNNIPAPNSTLQTLTTKFNLQGLNEVDLVALSGSHTIGLSRCTSFRQRLYNQSGNGQPDFTLDKSYATQLKSGCPKSGGDNNLFPLDFVSPTKFDNYYFKNLLSGHGLLNTDEELFSKGQAKTRKLVKEYAENEELFLKQFALSMVKMGNIKPLTGSNGEIRVNCRKVNS

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
284			80	20	0.995493
883	4		95		0.995482
1042		66	33		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain