SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene187741

Length: 219 nt

UniGene Fasta

>sp_v3.0_unigene187741
CAAAGGAGATCATCATCTGTTCAGTTCGTTCGGTTCGTGACGAAGAGTATCCCGGATGGGTAGGTCTCCTTGCAGCTCAAAAGAAGGGCTCAACCGCCGGATGTGGACCGCCAAGGAGGATATGATTCTCTCCGACTACATTCGAATTCATGGCCATGGTGGCTGGACAAATCTCCCCCAAAAAGCAGGCAGGTCTGATGCGGTGTGGAAAGAGTTGCA

Ace file of the UniGene sp_v3.0_unigene187741

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor DcMYB3-2 [Daucus carota]	-	-	5.0e-11	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%

Source	Gene names
Sma3	DcMYB3-1; DcMYB3-2; FcMYB251; GSVIVT00006679001; GSVIVT00016467001; GSVIVT00032264001; GSVIVT00034097001; LOC_Os03g29614; LjTT2a; LjTT2b; LjTT2c; MYB086; MYB087; MYB104; MYB134; Os03g0410000; Osmyb3; POPTRDRAFT_578002; POPTRDRAFT_668844; POPTRDRAFT_676836

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G49330.1	MYB111, ATMYB111, PFG3 myb domain protein 111 chr5:19999147-20001293 REVERSE LENGTH=342	6.0e-11	56%
RefSeq	Arabidopsis thaliana	NP_199744.1	myb domain protein 111 [Arabidopsis thaliana]	8.0e-11	56%
RefSeq	Populus trichocarpa	XP_002332935.1	predicted protein [Populus trichocarpa]	2.0e-13	65%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMJ6

Fln msg: Distance to subject end: 337 aas, your sequence is shorter than subject: 54 - 392

Fln protein: MGRSPCSSKEGLNRRMWTAKEDMILSDYIRIHGHGGWTNLPQKAGRSDAVWKEL

Protein Length: 55

Fln nts: CAAAGGAGATCATCATCTGTTCAGTTCGTTCGGTTCGTGACGAAGAGTATCCCGG_-_ATGGGTAGGTCTCCTTGCAGCTCAAAAGAAGGGCTCAACCGCCGGATGTGGACCGCCAAGGAGGATATGATTCTCTCCGACTACATTCGAATTCATGGCCATGGTGGCTGGACAAATCTCCCCCAAAAAGCAGGCAGGTCTGATGCGGTGTGGAAAGAGTTGCA

Fln Alignment:

AllPine_b_c19427___PCSSKEGLNRRMWTAKEDMILSDYIRIHGHGGWTNLPQKAG
B8LMJ6________________PCCSKEGLNRGAWTKKEDMILSEYIRIHGDGGWRNLPKKAG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain