SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene187556

Length: 476 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene187556
GCATTTGAACTTTCTGTTCTCTGTGATGCTGAAGTTGCTCTTATAATCGTCTCTGAAACGGGCAGGATTTATGAGTTTGCAAGCCACGACGAGGAAGGCAGTGCAGCGAACACAGGGTTATGGTATATCTCTCCATTGAATAGACTGAAGGCGATGAGTTGCTCAAGATTTTTGCCGTGAAGTTTTTGAAGAACTAAATATCTGTTTATTTCTGTCAGGGTTAAGGTCCTGGTAGGCCGAAATGCTATGATAAATCCTTATAAGAATTGTCGAAGGATATCCGCATGACTAAGATTCATTTTTTATCCTCAAATGAGGCCTGCCCTTTAACAACTCTTCTTCAGTGATGAGCGTAAGTGTAGGAAGTTGGTTGGTTTCTGTGAGGTTCATTCTGCTTAACGTTTTATGTTCAAATCTACACATAAAATTTTGTGTAAGGGTTTATGATGGAATTAATATTTAAGATTACAGTCGAC

Ace file of the UniGene sp_v3.0_unigene187556 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative transcription factor [Cucumis sativus]	-	-	2.0e-05	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor, MADS-box	IPR002100	-	0.0	-
Sma3	Transcription factor, K-box	IPR002487	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1V3

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 103 aas, putative chimeric sequence, your sequence is shorter than subject: 60 - 194

Fln protein: AFELSVLCDAEVALIIVSETGRIYEFASHDEEGSAANTGLWYISPLNRLKAMSCSRFLP*

Protein Length: 61

Fln nts: GCATTTGAACTTTCTGTTCTCTGTGATGCTGAAGTTGCTCTTATAATCGTCTCTGAAACGGGCAGGATTTATGAGTTTGCAAGCCACGACGAGGAAGGCAGTGCAGCGAACACAGGGTTATGGTATATCTCTCCATTGAATAGACTGAAGGCGATGAGTTGCTCAAGATTTTTGCCGTGA___AGTTTTTGAAGAACTAAATATCTGTTTATTTCTGTCAGGGTTAAGGTCCTGGTAGGCCGAAATGCTATGATAAATCCTTATAAGAATTGTCGAAGGATATCCGCATGACTAAGATTCATTTTTTATCCTCAAATGAGGCCTGCCCTTTAACAACTCTTCTTCAGTGATGAGCGTAAGTGTAGGAAGTTGGTTGGTTTCTGTGAGGTTCATTCTGCTTAACGTTTTATGTTCAAATCTACACATAAAATTTTGTGTAAGGGTTTATGATGGAATTAATATTTAAGATTACAGTCGAC

Fln Alignment:

AllPine_b_c19019___AFELSVLCDAEVALIIVSETGRIYEFASHDE
A9P1V3________________AFELSVLCDAEVALIIFSETGKIYEFASHND

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain