SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene187461

Length: 552 nt

UniGene Fasta

>sp_v3.0_unigene187461
AAGAGAAGTCACTTCATTCTGGGCCTTGTTTGCACCATTTTGGCCTGCGCGATCTATGGACTCCTCCTCACATTGACCCAACTTGTATTCCAGAAGGTTGCACAAAATTTCACTGTAGTTATGATCTCGCAGGCACTGGTTTACATGGTTGGAGCCTTGATTTGTGGATTGGGACTGTTAGCCAGTGCAGAATTCCGGTACCTGGGATCTGAGTCTCAGAACTTCAAGTCAGGGAAGGTGGCATACTTCATGACTCTTGTGTGGTGTGCAGTAGCTTGGCAACTCTATTCCCTGGGGACATTCGGATTGATTTTCTTGATTTCTTCATTGTTTTCTAATGTCATGAGCGCTTTGACTCTGCCTGTTGTTCCCATCTTGGCTGTCTTTTTCTTCCATGAGAAGCTGGATGGGATAAAGGTGTTGGCCATGCTCTTAGGGATCTGGGGTTTTGTTTCATATGTTTTTGGTGGATACAAAGACTCCAAGGTTACTGCAGATGCCGGTGGTGATAGCATGATCCATGAGACTTGTAGTTAGCCAGTCTCCTGTTAA

Ace file of the UniGene sp_v3.0_unigene187461

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable purine permease 10 n=2 Tax=Arabidopsis RepID=PUP10_ARATH	-	-	4.00001e-41	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%

Source	Gene names
Sma3	At1g44750; At4g18195; At4g18205; At4g18210; At4g18220; GSVIVT00003405001; GSVIVT00003407001; GSVIVT00018998001; GSVIVT00027937001; OJ1743_B12.21-1; OJ1743_B12.21-2; OSJNBa0013K16.22; OSJNBb0016D16.5; Os02g0689200; Os04g0587300; OsI_08525; OsI_17156; OsI_3

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	purine base transmembrane transporter activity	GO:0005345	Molecular Function	-
Sma3	purine base transport	GO:0006863	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Nucleotide-sugar transporter	IPR007271	-	-
Sma3	Cas1p 10 TM acyl transferase domain	IPR012419	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G18220.1	Drug/metabolite transporter superfamily protein chr4:10078768-10080109 FORWARD LENGTH=344	52%
RefSeq	Arabidopsis thaliana	NP_193556.1	putative purine permease 9 [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002326496.1	predicted protein [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLF0

Fln msg: your sequence is shorter than subject: 179 - 367

Fln protein: KRSHFILGLVCTILACAIYGLLLTLTQLVFQKVAQNFTVVMISQALVYMVGALICGLGLLASAEFRYLGSESQNFKSGKVAYFMTLVWCAVAWQLYSLGTFGLIFLISSLFSNVMSALTLPVVPILAVFFFHEKLDGIKVLAMLLGIWGFVSYVFGGYKDSKVTADAGGDSMIHETCS*

Protein Length: 180

Fln nts: AAGAGAAGTCACTTCATTCTGGGCCTTGTTTGCACCATTTTGGCCTGCGCGATCTATGGACTCCTCCTCACATTGACCCAACTTGTATTCCAGAAGGTTGCACAAAATTTCACTGTAGTTATGATCTCGCAGGCACTGGTTTACATGGTTGGAGCCTTGATTTGTGGATTGGGACTGTTAGCCAGTGCAGAATTCCGGTACCTGGGATCTGAGTCTCAGAACTTCAAGTCAGGGAAGGTGGCATACTTCATGACTCTTGTGTGGTGTGCAGTAGCTTGGCAACTCTATTCCCTGGGGACATTCGGATTGATTTTCTTGATTTCTTCATTGTTTTCTAATGTCATGAGCGCTTTGACTCTGCCTGTTGTTCCCATCTTGGCTGTCTTTTTCTTCCATGAGAAGCTGGATGGGATAAAGGTGTTGGCCATGCTCTTAGGGATCTGGGGTTTTGTTTCATATGTTTTTGGTGGATACAAAGACTCCAAGGTTACTGCAGATGCCGGTGGTGATAGCATGATCCATGAGACTTGTAGTTAG___CCAGTCTCCTGTTAA

Fln Alignment:

AllPine_b_c18828___ILGLVCTILACAIYGLLLTLTQLVFQKVA--QNFTVVMISQALVYMVGALICGLGLLASAEFRYLGSESQNFKSGKVAYFMTLVWCAVAWQLYSLGTFGLIFLISSLFSNVMSALTLPVVPILAVFFFHEKLDGIKVLAMLLGIWGFVSYVFGGYKDSK
B8LLF0________________IVGFICTIAASAIYGLLLPLMQLVFDRVIKKETFAVVLEMQIYTSLVATVVCIVGLFVSGEFRDIKEEAHSFTRGKVAYYMTLIWSAIGWQVCSVGVVGLIFLVSSLFSNVISTLALPVVPILSVGFFHDKMDALKIISMLLSIWGFVSYIFGGYVDSK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
304		66		33	0.997452
434		33		66	0.997476

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain