SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene187406

Length: 469 nt

UniGene Fasta

>sp_v3.0_unigene187406
CTGCCTTAGTTGAAATCAAGCGTTTGGATATTGTCATAACTCTCGATTTGGTCCATGATATAGTCACACCAGTTCCCATGACCATTTTTTGGCAAATTCCCCAGTATTTCTTAACCGGTGCTTCAGAAGTCTTTTTCTTTATAGGGAAGCTGGAGTTTTTCTATGATCAGTCTCCTGATGCAATGCGCAGCTTATGCAGTGCTCTTGCTCTTCTTACAACGGCATCAGGAAGCTATTTGAACACCTTAATTGTTACCATTGTCACTTATGTCACCACTAGAGGAGGAAGAAAGGGATGGATACCTGACAATCTCAATGAAGGCCATCTGGACAACTACTTTTGGCTTCTAGCTTTCCTTAGCTTTCTGAACTTCTTGGTATATGTCGCTTGTGTATACAGATACGAGTACAAGAAGGCCAACTGAGTCTAATTCCAACTATGTGTAATCCATTGAGTTATTCATTAGCC

Ace file of the UniGene sp_v3.0_unigene187406

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peptide transporter [Hakea actites]	-	-	5.0e-37	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	POT family protein, expressed	-	-	6.665e-20	-

Source	Gene names
Sma3	At1g62200; At2g02020; At2g02040; At3g54140; At5g01180; B1026C12.10; B1065G12.20; B1065G12.21; B1377B10.10; F14H20.11; F19K23.13; F24B22.100; F7J8_160; GSVIVT00015776001; GSVIVT00018968001; GSVIVT00021470001; GSVIVT00021471001; GSVIVT00024159001; GSVIVT000

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	high affinity oligopeptide transporter activity	GO:0015334	Molecular Function	-
Sma3	dipeptide transporter activity	GO:0042936	Molecular Function	-
Sma3	tripeptide transporter activity	GO:0042937	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	dipeptide transport	GO:0042938	Biological Process	-
Sma3	tripeptide transport	GO:0042939	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G01180.1	PTR5, ATPTR5 peptide transporter 5 chr5:61257-63240 REVERSE LENGTH=570	8.0e-38	62%
RefSeq	Arabidopsis thaliana	NP_195738.1	peptide transporter PTR5 [Arabidopsis thaliana]	1.0e-37	62%
RefSeq	Populus trichocarpa	XP_002315835.1	predicted protein [Populus trichocarpa]	4.00001e-40	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVR2

Fln msg: your sequence is shorter than subject: 141 - 594

Fln protein: ALVEIKRLDIVITLDLVHDIVTPVPMTIFWQIPQYFLTGASEVFFFIGKLEFFYDQSPDAMRSLCSALALLTTASGSYLNTLIVTIVTYVTTRGGRKGWIPDNLNEGHLDNYFWLLAFLSFLNFLVYVACVYRYEYKKAN*

Protein Length: 142

Fln nts: CTGCCTTAGTTGAAATCAAGCGTTTGGATATTGTCATAACTCTCGATTTGGTCCATGATATAGTCACACCAGTTCCCATGACCATTTTTTGGCAAATTCCCCAGTATTTCTTAACCGGTGCTTCAGAAGTCTTTTTCTTTATAGGGAAGCTGGAGTTTTTCTATGATCAGTCTCCTGATGCAATGCGCAGCTTATGCAGTGCTCTTGCTCTTCTTACAACGGCATCAGGAAGCTATTTGAACACCTTAATTGTTACCATTGTCACTTATGTCACCACTAGAGGAGGAAGAAAGGGATGGATACCTGACAATCTCAATGAAGGCCATCTGGACAACTACTTTTGGCTTCTAGCTTTCCTTAGCTTTCTGAACTTCTTGGTATATGTCGCTTGTGTATACAGATACGAGTACAAGAAGGCCAACTGA___GTCTAATTCCAACTATGTGTAATCCATTGAGTTATTCATTAGCC

Fln Alignment:

AllPine_b_c18701___ALVEIKRLDIVITLDLVHDIVTPVPMTIFWQIPQYFLTGASEVFFFIGKLEFFYDQSPDAMRXXXXXXXXXXXXXXXYLNXXXXXXXXXXXXRGGRKGWIPDNLNEGHLDNYFWLLAFLSFLNFLVYVACVYRYEYKKAN
A9NVR2________________ALVEIRRLNIVKTYDLVYDKGTPVPMSIFWQIPQYFLVGASEVFTFVGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSLIVTIVMFATTKGGNIGWIPDNLNEGHLDYYFWVLASLSVLNLLVYVSCAHRYKYKKAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain