SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene187258

Length: 397 nt

UniGene Fasta

>sp_v3.0_unigene187258
ATTTTATTGAAATAGATCCATTGTTGAATAACTATCGTGAACATCTTGATTATCGATTTGCGCAGTATAAGAAAACAAGAGAGTTGATTGATAAATATGAAGGTGGCTTGGAAGCATTTTCTAGGGGTTATGAAAAGATGGGATTTAATAGAAGTGCGGCTGGAATCACATACAGAGAGTGGGCACCTGGTGCTAAGGGGGCATCACTTATAGGAGATTTCAACAACTGGAATCCCAATGCTGATGTTATGACTAAGGTTGCTGCATGGGAGTGCTCTAGGACTTCCTGCTCTTGCTCTAGAAGTGCTCCTGCACCCAGGACTGCATACTGCGGACACATGCATACATACACATGTATACTCGTGTGCATACAAGAGGCTCCAAGCACATCTTCACC

Ace file of the UniGene sp_v3.0_unigene187258

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	starch branching enzyme II [Solanum tuberosum]	-	-	3.0e-36	77%
FL-Next	sp=1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	75%
Sma3	Starch branching enzyme II	-	-	8.267e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	1,4-alpha-glucan branching enzyme.	EC:2.4.1.18	-	3.687e-37	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		3.687e-37	%
Sma3	Metabolic pathways	01100		3.687e-37	%

Source	Gene names
Sma3	At2g36390; F17C15_70; GSVIVT00021658001; H0321H01.10; IBE; MICPUCDRAFT_49461; MICPUN_51374; OSJNBa0042I15.21; OSTLU_31320; OSTLU_45076; Os02g0528200; Os04g0409200; OsI_07480; OsI_15790; OsJ_06982; OsJ_14706; Ot03g00840; P0475F05.16; POPTRDRAFT_589574; RBE

Source	GOs	Term	Type	Identity
Sma3	amyloplast	GO:0009501	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	1,4-alpha-glucan branching enzyme activity	GO:0003844	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	amylopectin biosynthetic process	GO:0010021	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 13, N-terminal	IPR004193	-	-
Sma3	Glycosyl hydrolase, family 13, catalytic domain	IPR006047	-	-
Sma3	Alpha-amylase, C-terminal all beta	IPR006048	-	-
Sma3	FBD	IPR006566	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G03650.1	SBE2.2 starch branching enzyme 2.2 chr5:931924-937470 FORWARD LENGTH=805	9.99967e-42	75%
RefSeq	Arabidopsis thaliana	NP_195985.3	1,4-alpha-glucan branching enzyme [Arabidopsis thaliana]	9.99967e-42	75%
RefSeq	Populus trichocarpa	XP_002326414.1	predicted protein [Populus trichocarpa]	9.99995e-41	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LZS3

Fln msg: Distance to subject end: 547 aas, your sequence is shorter than subject: 131 - 805

Fln protein: FIEIDPLLNNYREHLDYRFAQYKKTRELIDKYEGGLEAFSRGYEKMGFNRSAAGITYREWAPGAKGASLIGDFNNWNPNADVMTKVAAWECSRTSCSCSRSAPAPRTAYCGHMHTYTCILVCIQEAPSTSS

Protein Length: 132

Fln nts: ATTTTATTGAAATAGATCCATTGTTGAATAACTATCGTGAACATCTTGATTATCGATTTGCGCAGTATAAGAAAACAAGAGAGTTGATTGATAAATATGAAGGTGGCTTGGAAGCATTTTCTAGGGGTTATGAAAAGATGGGATTTAATAGAAGTGCGGCTGGAATCACATACAGAGAGTGGGCACCTGGTGCTAAGGGGGCATCACTTATAGGAGATTTCAACAACTGGAATCCCAATGCTGATGTTATGACTAAGGTTGCTGCATGGGAGTGCTCTAGGACTTCCTGCTCTTGCTCTAGAAGTGCTCCTGCACCCAGGACTGCATACTGCGGACACATGCATACATACACATGTATACTCGTGTGCATACAAGAGGCTCCAAGCACATCTTCACC

Fln Alignment:

AllPine_b_c18387___EIDPLLNNYREHLDYRFAQYKKTRELIDKYEGGLEAFSRGYEKMGFNRSAAGITYREWAPGAKGASLIGDFNNWNPNADVMTK--VAAWE
Q9LZS3________________EIDPMLRTYNNHLDYRYGQYKRLREEIDKYEGGLEAFSRGYEKLGFSRSDAGITYREWAPGAKAASLIGDFNNWNSNADIMTRNEFGVWE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain