SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene187085

Length: 123 nt

UniGene Fasta

>sp_v3.0_unigene187085
AAGGGTAGAGATGGATCCCGGCAGCTTTCGAACATTTGATACGCATTACTACACCAATCTAATGAAGCACAAAGGCCTCTTTCAATCCGATGCCGCACTTCTGACCAACAACGAGGTACAAGC

Ace file of the UniGene sp_v3.0_unigene187085

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peroxidase (Fragment) n=1 Tax=Pinus taeda RepID=O22602_PINTA	-	-	3.0e-10	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Peroxidase 27, putative	-	-	3.016e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	8.613e-06	-

Source	KEGGs	Term	e value	Identity
Sma3	Phenylalanine metabolism	00360	8.613e-06	%
Sma3	Methane metabolism	00680	8.613e-06	%
Sma3	Phenylpropanoid biosynthesis	00940	8.613e-06	%
Sma3	Biosynthesis of phenylpropanoids	01061	8.613e-06	%
Sma3	Metabolic pathways	01100	8.613e-06	%
Sma3	Biosynthesis of secondary metabolites	01110	8.613e-06	%

Source	Gene names
Sma3	GSVIVT00026053001; POPTRDRAFT_568220; POPTRDRAFT_679511; POPTRDRAFT_718485; POPTRDRAFT_743906; PX2; RCOM_0231780; RCOM_0905920;

Source	GOs	Term	Type	Identity
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G01190.1	Peroxidase superfamily protein chr3:67236-68477 REVERSE LENGTH=321	8.0e-11	61%
RefSeq	Populus trichocarpa	XP_002327937.1	predicted protein [Populus trichocarpa]	5.0e-12	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P1P4

Fln msg: Distance to subject end: 43 aas, your sequence is shorter than subject: 40 - 324

Fln protein: RVEMDPGSFRTFDTHYYTNLMKHKGLFQSDAALLTNNEVQ

Protein Length: 41

Fln nts: AAGGGTAGAGATGGATCCCGGCAGCTTTCGAACATTTGATACGCATTACTACACCAATCTAATGAAGCACAAAGGCCTCTTTCAATCCGATGCCGCACTTCTGACCAACAACGAGGTACAAGC

Fln Alignment:

AllPine_b_c18010___VEMDPGSFRTFDTHYYTNLMKHKGLFQSDAALLTNNEVQ
A9P1P4________________VEMDPGSFRTFDTHYYVNVKKNRGLFQSDAALLTNNEAQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain