SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene187072

Length: 448 nt

UniGene Fasta

>sp_v3.0_unigene187072
GAACAATTGAAGAATGCATACGAACTATGATATTTGATCAAGATCTTCCAAAGTTTCTATGGGGTGAGGCAGTTATGACAACAATATATCTACAAAATAGAAGTCCTCATAGAATTCTTGAGAATATGACACCTGAAGAAGCATTCACAGGGAAGAAGCCTTGTGTGGACCATCTTCGAATCTTTGGGTGTCCCGCATATATCCATGTTCCATTTGACAAGTGAAAGAAACTAGATTCTACAAGCATTAAAGGGATCTTCGTTGGCTACAACCTTTCTTCAAAAGCTTATAGAATCTACATTAAGGAAGGAAGACAAATTGAAGTGAGCAGGGATGTTATATTCGATGAGAATCATGCCTACAAAAGATATGAGGATATCCCAAACGATTCCAATGACGAAGATACACCACTATTTGAAGAAGAAGAGCATCATGATAAGACAACCAC

Ace file of the UniGene sp_v3.0_unigene187072

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-type polyprotein n=1 Tax=Cucumis melo subsp. melo RepID=E5GCE4_CUCME	-	-	1.0e-27	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%

Source	Gene names
Sma3	At2g15650; LOC_Os03g26290; LOC_Os03g61660; LOC_Os10g01750; LOC_Os12g05520; OSJNBa0013O08.17; OSJNBa0065H03.10; OSJNBa0078D06.27; Os07g0434200; Os10g0106900; SDM1_42t00010; VITISV_005279; VITISV_008931; VITISV_011061; VITISV_013624; VITISV_024577; VITISV_0

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3		IPR010256	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 148 - 407

Fln protein: TIEECIRTMIFDQDLPKFLWGEAVMTTIYLQNRSPHRILENMTPEEAFTGKKPCVDHLRIFGCPAYIHVPFDK*KKLDSTSIKGIFVGYNLSSKAYRIYIKEGRQIEVSRDVIFDENHAYKRYEDIPNDSNDEDTPLFEEEEHHDKTT

Protein Length: 149

Fln nts: GAACAATTGAAGAATGCATACGAACTATGATATTTGATCAAGATCTTCCAAAGTTTCTATGGGGTGAGGCAGTTATGACAACAATATATCTACAAAATAGAAGTCCTCATAGAATTCTTGAGAATATGACACCTGAAGAAGCATTCACAGGGAAGAAGCCTTGTGTGGACCATCTTCGAATCTTTGGGTGTCCCGCATATATCCATGTTCCATTTGACAAGTGAAAGAAACTAGATTCTACAAGCATTAAAGGGATCTTCGTTGGCTACAACCTTTCTTCAAAAGCTTATAGAATCTACATTAAGGAAGGAAGACAAATTGAAGTGAGCAGGGATGTTATATTCGATGAGAATCATGCCTACAAAAGATATGAGGATATCCCAAACGATTCCAATGACGAAGATACACCACTATTTGAAGAAGAAGAGCATCATGATAAGACAACCAC

Fln Alignment:

AllPine_b_c17980___TIEECIRTMIFDQDLPKFLWGEAVMTTIYLQNRSPHRILENMTPEEAFTGKKPCVDHLRIFGCPAYIHVPFDK*KKLDSTSIKGIFVGYNLSSKAYRIYIKEGRQIEVSRDVIFDE
B8LKX7________________TLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKPTVSHFKVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYSETSKAYRVYDPEKNEILIRRDVIFDE

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
47	33			66	0.997476
73		33		66	0.997476
90	33	66			0.997476
116		33		66	0.997476
135	50		50		1.0
150	50		50		1.0
161	50			50	1.0
178	50		50		1.0
200		50		50	1.0
213	50			50	1.0
214	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain