SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene186977

Length: 573 nt

UniGene Fasta

>sp_v3.0_unigene186977
TACCTGTTCCTGTCACAGTGTTTGCCTTCGCCTCTCCCCGCGTAGGAAACTCAACGTTCGTCCAACGTATGGAGGAGATTGGTGTGAATGTTCTGAGGTTGGTTAACCAGCACGATGTTGTTCCGAATGTCCCTGGTCTTTTTATGAACGAGAGCATGGGATGGGCGAGCAAACTCCTCAGTTGGCTTCCCTGGACATATTTTCATGTGGGCATCCAGCTTTCCCTGCATAACGAAAGCTCTCCCTTCTTGAAGGACACTCATAATCTGTCCGACTTCCATAGTTTAGAGGTTATCTCCATTTACTGGATGGCTATGTTGGGGTGAACAAATCCTTCAAATCTTCGGGTAGAGATCTAGCTCTTGTCAATAAGAGGTGTGCCTTATTGATTGATAGCCTTCATATTCCGTCCCACTGGTGGCGTGAAGAAAACAAAGGTCTAGTAAAAAATGCAAATGGTAAATGGACATGGCCTGCTAGATCTCCTCGGTCTCCCGACGCAGACTATGACCCGCACCAGATCTGACCAGATCTTATTGAATCAGTATACTGCCCAAATTTTGATAATGGAAT

Ace file of the UniGene sp_v3.0_unigene186977

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chloroplast lipase protein n=1 Tax=Brassica napus RepID=B8Y0L4_BRANA	-	-	1.0e-35	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%

Source	Gene names
Sma3	At1g06800; At2g30550; CLIP; F4H5.11; GSVIVT00023845001; POPTRDRAFT_754236; POPTRDRAFT_861846; RCOM_0992060; VITISV_012945;

Source	GOs	Term	Type	e value	Identity
Sma3	triglyceride lipase activity	GO:0004806	Molecular Function	0.0	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G06800.1	PLA-I{gamma}1 alpha/beta-Hydrolases superfamily protein chr1:2089538-2091443 REVERSE LENGTH=515	1.0e-36	53%
RefSeq	Arabidopsis thaliana	NP_849603.1	phospholipase A1-Igamma1 [Arabidopsis thaliana]	1.0e-36	53%
RefSeq	Populus trichocarpa	XP_002302074.1	predicted protein [Populus trichocarpa]	2.0e-37	51%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNC6

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 293 and 293, query STOP codon is far from subject stop. Distance to subject end: 28 aas, your sequence is shorter than subject: 175 - 489

Fln protein: PVPVTVFAFASPRVGNSTFVQRMEEIGVNVLRLVNQHDVVPNVPGLFMNESMGWASKLLSWLPWTYFHVGIQLSLHNESSPFLKDTHNLSDFHSLExxLHLLDGYVGVNKSFKSSGRDLALVNKRCALLIDSLHIPSHWWREENKGLVKNANGKWTWPARSPRSPDADYDPHQI*

Protein Length: 176

Fln nts: TACCTGTTCCTGTCACAGTGTTTGCCTTCGCCTCTCCCCGCGTAGGAAACTCAACGTTCGTCCAACGTATGGAGGAGATTGGTGTGAATGTTCTGAGGTTGGTTAACCAGCACGATGTTGTTCCGAATGTCCCTGGTCTTTTTATGAACGAGAGCATGGGATGGGCGAGCAAACTCCTCAGTTGGCTTCCCTGGACATATTTTCATGTGGGCATCCAGCTTTCCCTGCATAACGAAAGCTCTCCCTTCTTGAAGGACACTCATAATCTGTCCGACTTCCATAGTTTAGAGxxxxxxCTCCATTTACTGGATGGCTATGTTGGGGTGAACAAATCCTTCAAATCTTCGGGTAGAGATCTAGCTCTTGTCAATAAGAGGTGTGCCTTATTGATTGATAGCCTTCATATTCCGTCCCACTGGTGGCGTGAAGAAAACAAAGGTCTAGTAAAAAATGCAAATGGTAAATGGACATGGCCTGCTAGATCTCCTCGGTCTCCCGACGCAGACTATGACCCGCACCAGATCTGACCAGATCTTATTGAATCAGTATACTGCCCAAATTTTGATAATGGAAT

Fln Alignment:

AllPine_b_c17799___VPVTVFAFASPRVGNSTFVQRMEEIGVNVLRLVNQHDVVPNVPGLFMNESMGWASKLLSWLPWTYFHVGIQLSLHNESSPFLKDTHNLSDFHSLEVYLHLLDGYVGVNKSFKSSGRDLALVNKRCALLIDSLHIPSHWWREENKGLVKNANGKWTWPARSPRSPDADYDP
B8LNC6________________IPVTVFAFASPRVGNPTFARRMEEIGVKVLRLVNKDDVVPKFPGFFMNENMGWLSRLLDWLPWTYSHVGIKVSLDIESSSFLKQTHSLSDFHSLEVYLHLLDGFVAEKKPFKPSGRDPSLVNKSCDLLVETLHIPPYWWQERNKGLVKGADGKWTCPARSPRSPDADCNP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
398		66		33	0.997452
399		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain