SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene186513

Length: 183 nt

UniGene Fasta

>sp_v3.0_unigene186513
GCATAAATTTATGAAATATATATTTCATCTTATTATATATCGTAAAAGATAACAAGAGATGACTCGCTACTCGAGAGAGCCTGAGAATCCGTCCAAGTCGGTCAAGGCGCGCGGCTCCTATCTACGTACTCACTTCAAGAATACCAGAGAGGTCGGCCATGCCATCCTGAGAATGCCGCTCAG

Ace file of the UniGene sp_v3.0_unigene186513

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein PETRP n=1 Tax=Capsicum annuum RepID=Q6RK02_CAPAN	-	-	9.0e-10	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%

Source	Gene names
Sma3	GSVIVT00002839001; GSVIVT00002840001; GSVIVT00017930001; PETRP; VITISV_011749;

Source	GOs	Term	Type	Identity
Sma3	large ribosomal subunit	GO:0015934	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L22/L17	IPR001063	-	-
Sma3	Ribosomal protein L22/L17, eukaryotic/archaeal	IPR005721	-	-
Sma3	Ribosomal protein L22/L17, conserved site	IPR018260	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G67430.1	Ribosomal protein L22p/L17e family protein chr1:25262209-25263627 FORWARD LENGTH=175	4.0e-13	65%
RefSeq	Arabidopsis thaliana	NP_001185343.1	60S ribosomal protein L17-2 [Arabidopsis thaliana]	3.0e-13	65%
RefSeq	Populus trichocarpa	XP_002318720.1	predicted protein [Populus trichocarpa]	5.0e-13	65%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NT14

Fln msg: Distance to subject end: 141 aas, your sequence is shorter than subject: 41 - 183

Fln protein: MTRYSREPENPSKSVKARGSYLRTHFKNTREVGHAILRMPL

Protein Length: 42

Fln nts: GCATAAATTTATGAAATATATATTTCATCTTATTATATATCGTAAAAGATAACAAGAG_-_ATGACTCGCTACTCGAGAGAGCCTGAGAATCCGTCCAAGTCGGTCAAGGCGCGCGGCTCCTATCTACGTACTCACTTCAAGAATACCAGAGAGGTCGGCCATGCCATCCTGAGAATGCCGCTCAG

Fln Alignment:

AllPine_b_c16502___MTRYSREPENPSKSVKARGSYLRTHFKNTREVGHAILRMPL
A9NT14________________MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAQAVKKLPL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
36	33			66	0.997453
38		33		66	0.997454
40	33			66	0.997454
41		66	33		0.997461
42	33		66		0.997456
45	66			33	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain