SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene186336

Length: 204 nt

UniGene Fasta

>sp_v3.0_unigene186336
ATTCTTTGGGGCTTTGTTTGGGAGTGGAAATTCGGTTTGAGCAAGATGGGGCGTGTGGAGATAGTATACGGCAGCTTTGATGATGTGTTCAAGTTCGAAGCAATCAGGACATATGTTGCAGAGTTTATCTCCACTCTGCTCTTCGTCTTTGCCGGTGTCGGATCTGTCATGGCTTACGATAAGCTGACCTCGGATGCATCTCTG

Ace file of the UniGene sp_v3.0_unigene186336

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aquaporin TIP2-1 n=4 Tax=Brassicaceae RepID=TIP21_ARATH	-	-	4.0e-11	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	Aquaporin	-	-	3.188e-08	-

Source	Gene names
Sma3	AT3G16240; At3g16240; DIP; FavRB7; GSVIVT00034350001; LRB7; MYA6.10; POPTRDRAFT_548890; POPTRDRAFT_645978; POPTRDRAFT_680648; RCOM_1492500; TIP1; TIP2; TIP2-1; VIP3; VITISV_011435; aqp1; delta-TIP; dtip; tip2;

Source	GOs	Term	Type	Identity
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Major intrinsic protein	IPR000425	-	0.0	-
Sma3	Aquaporin	IPR012269	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G16240.1	" DELTA-TIP, TIP2;1, DELTA-TIP1, AQP1, ATTIP2;1 delta tonoplast integral protein chr3:5505534-5506788 FORWARD LENGTH=250"	2.0e-16	68%
RefSeq	Arabidopsis thaliana	NP_188245.1	aquaporin TIP2-1 [Arabidopsis thaliana]	2.0e-16	68%
RefSeq	Populus trichocarpa	XP_002337227.1	predicted protein, partial [Populus trichocarpa]	2.0e-15	66%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT26

Fln msg: Distance to subject end: 79 aas, your sequence is shorter than subject: 53 - 131

Fln protein: MGRVEIVYGSFDDVFKFEAIRTYVAEFISTLLFVFAGVGSVMAYDKLTSDASL

Protein Length: 54

Fln nts: ATTCTTTGGGGCTTTGTTTGGGAGTGGAAATTCGGTTTGAGCAAG_-_ATGGGGCGTGTGGAGATAGTATACGGCAGCTTTGATGATGTGTTCAAGTTCGAAGCAATCAGGACATATGTTGCAGAGTTTATCTCCACTCTGCTCTTCGTCTTTGCCGGTGTCGGATCTGTCATGGCTTACGATAAGCTGACCTCGGATGCATCTCTG

Fln Alignment:

AllPine_b_c15813___VEIVYGSFDDVFKFEAIRTYVAEFISTLLFVFAGVGSVMAYDKLTSDASL
C0PT26________________IGVAFGRFDEAFGLDGFKSYLAEFISTLLFVFAGVGSAMAYDKLTSSAAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain