SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene186196

Length: 468 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene186196
TTTCTGCAATAATGGAATACAAGTTCGAATGTTCCAAGCTTGTTGCCTCTTTAATGCTGTCCATTCTTACTCTCAGCAGCACAGCATCCCTGTCTCCCAATGGCATCAACTATGAAGTGGTAGCATTAATGGCAATAAAGAGCCAGCTGAATGATCCAAACAATGTGCTGGAGGCATGGGATATAAACTCAGTGGACCCTTGCAGTTGGAGCATGGTTACTTGTTCTTCTTCAGATGGATCTGTTACTGCAATGTCAGTTGTCTTGTATCTTATACTTTCGGTTTAGTTGAGTGATTATTAGAAAACTTAACATTGTTGTAATCAGAACTAAGGTATTTCGCAAAATGACAGGGGAATCCCCAGCCAGAGGTTGTCTGGTACTCTCTCACGAGGCATTGGGAACTTGACACATCTTCAGACGTTGTAAGTAAACGTGCCCTTGAAGTTAAGTGTCTTTTCATGGGGTT

Ace file of the UniGene sp_v3.0_unigene186196 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat receptor-like kinase [Ipomoea batatas]	-	-	3.0e-20	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%

Source	Gene names
Sma3	F8A5.31; GSVIVT00002751001; Os01g0171000; OsI_00578; OsJ_00547; OsSERK1; P0583G08.19-1; P0583G08.19-2; VITISV_035381;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002315684.1	predicted protein, partial [Populus trichocarpa]	5.0e-21	49%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PST3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 105 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 139 - 211

Fln protein: MEYKFECSKLVASLMLSILTLSSTASLSPNGINYEVVALMAIKSQLNDPNNVLEAWDINSVDPCSWSMVTCSSSDGSVTAMSVVLYLILSV*LSDY*KT*HCCNQN*GISQNDRGIPSQRLSGTLSRGIGNLTHLQTL*

Protein Length: 140

Fln nts: TTTCTGCAATA_-_ATGGAATACAAGTTCGAATGTTCCAAGCTTGTTGCCTCTTTAATGCTGTCCATTCTTACTCTCAGCAGCACAGCATCCCTGTCTCCCAATGGCATCAACTATGAAGTGGTAGCATTAATGGCAATAAAGAGCCAGCTGAATGATCCAAACAATGTGCTGGAGGCATGGGATATAAACTCAGTGGACCCTTGCAGTTGGAGCATGGTTACTTGTTCTTCTTCAGATGGATCTGTTACTGCAATGTCAGTTGTCTTGTATCTTATACTTTCGGTTTAGTTGAGTGATTATTAGAAAACTTAACATTGTTGTAATCAGAACTAAGGTATTTCGCAAAATGACAGGGGAATCCCCAGCCAGAGGTTGTCTGGTACTCTCTCACGAGGCATTGGGAACTTGACACATCTTCAGACGTTGTAAGTAAACGTGCCCTTGAAGTTAAGTGTCTTTTCATGGGGTT

Fln Alignment:

AllPine_b_c15360___NYEVVALMAIKSQLNDPNNVLEAWDINSVDPCSWSMVTCSSSDGSVTAMXXXXXXXXXXXXSDY*KT*HCCNQN*GISQNDRGIPSQRLSGTLSRGIGNLTHLQTL
C0PST3________________NSEGDALYALRRNLHDPENVLQSWDPTLVNPCTWFHVTC-DRDNRVTRL---------------------------------DLGNARLSGSLVPDLGRLTHLQYL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain