SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene186071

Length: 677 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene186071 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S8 (Fragment) n=1 Tax=Latrodectus hesperus RepID=E7D1D5_9ARAC	-	-	76%
FL-Next	sp=40S ribosomal protein S8; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Sma3	Ribosomal protein S8	-	-	-

Source	Gene names
Sma3	57h21.8; At5g20290; At5g59240; CHLREDRAFT_195605; F5O24_180; GSVIVT00003491001; GSVIVT00012482001; GSVIVT00027218001; MICPUCDRAFT_34143; MICPUN_95694; OSJNBa0038P21.4; OSTLU_29541; Os02g0489400; Os04g0349500; OsI_07259; OsI_15456; OsJ_06781; OsJ_14370; Ot

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S8e	IPR001047	-	0.0	-
Sma3	Ribosomal protein S8e, conserved site	IPR018283	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G20290.1	Ribosomal protein S8e family protein chr5:6851695-6853012 REVERSE LENGTH=222	57%
RefSeq	Arabidopsis thaliana	NP_197529.1	40S ribosomal protein S8-1 [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002299926.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
98	20		80		0.995493
356	71		28		1.0
392	71		28		1.0
401	71		28		1.0
416		28		71	1.0
437	50	50			1.0
440	50		50		1.0
441		50	50		1.0
446			33	66	0.997471
448	33	66			0.997476
515	33		66		0.997471
545	33		66		0.997476
553			33	66	0.997461
593		33		66	0.997455

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain