SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene185966

Length: 294 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene185966
CAGAGATGGTTACATGATCAAAAGTGGTCACTCTACCGTCGAATATGTTGATAAAGCTGTTCGATATGTTTTATTGAGACAAGGAGTTTTGGGTATCAAGGTCGCTATCATGTTGCCTCACGATCCAACTGGAAAACAATCTCATCTCCCATCTAAACCACAAGCAGATATTGTAACAATTTTGGACCCTAAGGAAGAAATTGTAAGACCAATCACCACAAAGGAGGAACCTGAAACTCCCAACGCTGATGTTGCTGCTCAATAATAAATCATACGTACCACGTATTATATAAA

Ace file of the UniGene sp_v3.0_unigene185966 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S3-3 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NDL2_PHYIT	-	-	3.0e-20	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	40S ribosomal protein S3, putative	-	-	1.103e-08	-

Source	Gene names
Sma3	At3g53870; CHLREDRAFT_134051; F5K20_170; GSVIVT00016476001; GSVIVT00032258001; GSVIVT00034104001; LOC_Os03g38000; OSJNBa0008D12.4; OSJNBa0072I06.38; OSJNBb0018L13.2; OSJNBb0024A20.19; Os03g0577000; Os07g0608500; OsI_12347; OsI_26820; OsJ_11524; OsJ_25071;

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S3, C-terminal	IPR001351	-	-
Sma3	K Homology domain, type 2	IPR004044	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Ribosomal protein S3, eukaryotic/archaeal	IPR005703	-	-
Sma3	Ribosomal protein S3, conserved site	IPR018280	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G31610.1	Ribosomal protein S3 family protein chr2:13450384-13451669 FORWARD LENGTH=250	5.0e-20	48%
RefSeq	Arabidopsis thaliana	NP_180719.1	40S ribosomal protein S3-1 [Arabidopsis thaliana]	7.0e-20	48%
RefSeq	Populus trichocarpa	XP_002322150.1	predicted protein [Populus trichocarpa]	6.0e-19	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTN5

Fln msg: your sequence is shorter than subject: 88 - 233

Fln protein: RDGYMIKSGHSTVEYVDKAVRYVLLRQGVLGIKVAIMLPHDPTGKQSHLPSKPQADIVTILDPKEEIVRPITTKEEPETPNADVAAQ*

Protein Length: 89

Fln nts: CAGAGATGGTTACATGATCAAAAGTGGTCACTCTACCGTCGAATATGTTGATAAAGCTGTTCGATATGTTTTATTGAGACAAGGAGTTTTGGGTATCAAGGTCGCTATCATGTTGCCTCACGATCCAACTGGAAAACAATCTCATCTCCCATCTAAACCACAAGCAGATATTGTAACAATTTTGGACCCTAAGGAAGAAATTGTAAGACCAATCACCACAAAGGAGGAACCTGAAACTCCCAACGCTGATGTTGCTGCTCAATAA___TAAATCATACGTACCACGTATTATATAAA

Fln Alignment:

AllPine_b_c14589___RDGYMIKSGHSTVEYVDKAVRYVLLRQGVLGIKVAIMLPHDPTGKQSHLPSKPQADIVTILDPKEE
A9NTN5________________KDGYMISSGQPVNEYIDKAVRHVLLRQGVLGIKVKIMLDWDPKGKQG--PTTPLPDLVTIHTPKEE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain