SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene185921

Length: 443 nt

UniGene Fasta

>sp_v3.0_unigene185921
CGGATAAATCAGATGTCTATAGTTTCGGAATGCTTTTGCTAGAGATAGTTGGGGGAAGAAAGAACTTTGATGGGAACGTCAGCCATTCCAGTCAGTTTTACTTTCCTCAGTGGGCCTTCAAGATGCTTGATAGTGAGGAGTTGGGGACAACATTGACAGAAGGAAACAGGGACGCAGAGGATGTGGAGAAGGCAAGAAGTCTCATCAAAGTTGGCCTATGGTGTATCCAATACAACTACATAGATCGTCCTTGTATGAGCAAGGTTGTTCAAATGATCGAAGGTAATGGAGACGATGTGGCCAATCCTCCCTCTGCCTTCAAGTGCTCCTCGCCTGCACCTGAAATTCCTTCTTTGTCTTTATTATCTTCCATTGACGAATCTTGTTCGATTAGATTGTAGATTTCTGTGTAAGAGTTAGGATCTTCAAACTGTCATTTGCTG

Ace file of the UniGene sp_v3.0_unigene185921

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Sma3	Chromosome chr16 scaffold_86, whole genome shotgun sequence	-	-	1.498e-11	-

Source	Gene names
Sma3	GSVIVT00004966001; GSVIVT00005230001; GSVIVT00006443001; GSVIVT00006445001; GSVIVT00006446001; GSVIVT00007775001; GSVIVT00007873001; GSVIVT00007885001; GSVIVT00007932001; GSVIVT00010087001; GSVIVT00010233001; GSVIVT00011200001; GSVIVT00011216001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	protein kinase CK2 complex	GO:0005956	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	protein kinase CK2 regulator activity	GO:0008605	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Casein kinase II, regulatory subunit	IPR000704	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3		IPR014045	-	-
Sma3	Casein kinase II, regulatory subunit, alpha-helical	IPR016149	-	-
Sma3	Casein kinase II, regulatory subunit, beta-sheet	IPR016150	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002327951.1	predicted protein, partial [Populus trichocarpa]	3.0e-29	50%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NM60

Fln msg: your sequence is shorter than subject: 133 - 431

Fln protein: DKSDVYSFGMLLLEIVGGRKNFDGNVSHSSQFYFPQWAFKMLDSEELGTTLTEGNRDAEDVEKARSLIKVGLWCIQYNYIDRPCMSKVVQMIEGNGDDVANPPSAFKCSSPAPEIPSLSLLSSIDESCSIRL*

Protein Length: 134

Fln nts: CGGATAAATCAGATGTCTATAGTTTCGGAATGCTTTTGCTAGAGATAGTTGGGGGAAGAAAGAACTTTGATGGGAACGTCAGCCATTCCAGTCAGTTTTACTTTCCTCAGTGGGCCTTCAAGATGCTTGATAGTGAGGAGTTGGGGACAACATTGACAGAAGGAAACAGGGACGCAGAGGATGTGGAGAAGGCAAGAAGTCTCATCAAAGTTGGCCTATGGTGTATCCAATACAACTACATAGATCGTCCTTGTATGAGCAAGGTTGTTCAAATGATCGAAGGTAATGGAGACGATGTGGCCAATCCTCCCTCTGCCTTCAAGTGCTCCTCGCCTGCACCTGAAATTCCTTCTTTGTCTTTATTATCTTCCATTGACGAATCTTGTTCGATTAGATTGTAG___ATTTCTGTGTAAGAGTTAGGATCTTCAAACTGTCATTTGCTG

Fln Alignment:

AllPine_b_c14458___KSDVYSFGMLLLEIVGGRKNFDGNVSHSSQFYFPQWAFKMLDSEELGTTLTEG--NRDAEDVEKARSLIKVGLWCIQYNYIDRPCMSKVVQMIEGNGDDVANPPS
A9NM60________________KSDVFSYGMVLLEIISGRRNVD-NTRDSDNWYFPSIAINKARQDKMEEIIETGLEMKRPEDLEEAYRLIKTALWCVQSNSGLRPSMGTVVRILEGD-LEILDPPS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
192	33		66		0.997476
353	33			66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain