SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene185765

Length: 334 nt

UniGene Fasta

>sp_v3.0_unigene185765
CTTTCTTGTCACTACATTGCCGATAATGAGAATGATCAGCACAGTCGGTAGCAGCAACTGATAGGTTTCAGGGGTGCACTGTGCTTTTGCGGATCTCAAGCTTTAACATACGATGGTGGATGCGGTGGAGTTGCCGAGTAGATTGGCTGTTCTGCCGTTCCGGAACAGGGTTCTGCTCCCCGGTGCCATTGTTAGAATTCGTTGCACTTCGCCCTCCAGTGTAAAATTGGTGGAGCATGAATTATGGCAAAAGGAGGATAAAGGCTTGATCGGTGTTCTTCCTGTGAAAGATGGACAGGCTGCAGATACCACCTCCACAGCCTCACCTGTCCTA

Ace file of the UniGene sp_v3.0_unigene185765

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent protease La, putative n=1 Tax=Ricinus communis RepID=B9SS30_RICCO	-	-	4.0e-24	70%
FL-Next	sp=Lon protease homolog 2, peroxisomal; Zea mays (Maize).	-	-	0.0	80%
Sma3	Lon protease homolog	-	-	4.571e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	1.232e-17	-

Source	Gene names
Sma3	At5g47040; GSVIVT00015853001; LON; LON1; Lon1; MQD22.18; OJ1112_E07.9; Os09g0533400; OsI_32159; OsJ_30122; P0515E01.28; PHYPADRAFT_161045; POPTRDRAFT_827676; POPTRDRAFT_836320; RCOM_0520240; VITISV_034238; lon;

Source	GOs	Term	Type	Identity
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	ATP-dependent peptidase activity	GO:0004176	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	ATP-dependent proteolysis	GO:0006510	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001984	-	-
Sma3	Peptidase S16, lon N-terminal	IPR003111	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Peptidase S16, ATP-dependent protease La	IPR004815	-	-
Sma3	Peptidase S16, active site	IPR008268	-	-
Sma3	Peptidase S16, Lon C-terminal	IPR008269	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G47040.1	LON2 lon protease 2 chr5:19093356-19098678 REVERSE LENGTH=888	3.0e-26	71%
RefSeq	Arabidopsis thaliana	NP_568675.1	ATP-dependent Lon protease [Arabidopsis thaliana]	4.0e-26	71%
RefSeq	Populus trichocarpa	XP_002329591.1	predicted protein [Populus trichocarpa]	1.0e-30	76%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: P93647

Fln msg: Distance to subject end: 810 aas, your sequence is shorter than subject: 74 - 885

Fln protein: MVDAVELPSRLAVLPFRNRVLLPGAIVRIRCTSPSSVKLVEHELWQKEDKGLIGVLPVKDGQAADTTSTASPVL

Protein Length: 75

Fln nts: CTTTCTTGTCACTACATTGCCGATAATGAGAATGATCAGCACAGTCGGTAGCAGCAACTGATAGGTTTCAGGGGTGCACTGTGCTTTTGCGGATCTCAAGCTTTAACATACG_-_ATGGTGGATGCGGTGGAGTTGCCGAGTAGATTGGCTGTTCTGCCGTTCCGGAACAGGGTTCTGCTCCCCGGTGCCATTGTTAGAATTCGTTGCACTTCGCCCTCCAGTGTAAAATTGGTGGAGCATGAATTATGGCAAAAGGAGGATAAAGGCTTGATCGGTGTTCTTCCTGTGAAAGATGGACAGGCTGCAGATACCACCTCCACAGCCTCACCTGTCCTA

Fln Alignment:

AllPine_b_c14008___VELPSRLAVLPFRNRVLLPGAIVRIRCTSPSSVKLVEHELWQKEDKGLIGVLPVKDGQAADTTSTASP
P93647________________VELPSRLAVLPFRNKVLLPGAIVRIRCTNPSSVKLVEQELWQKEEKGLIGVLPVRDSEATAVGSLLSP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain