SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene185688

Length: 332 nt

UniGene Fasta

>sp_v3.0_unigene185688
TGTTGAGAAATTCCTAAAGCAATATGCTTATGAAATGCCAACCAGATATACATACTCTCAACTCAAGAAGATCACAAACAACTTTGAAGAAAAGTTGGGAGAAGGAGGTTATGGTGTGGTGTATAAAGGAAAGCTTCCGAACGGAGCCCTAGTGGCTGTTAAGATTCTGGACAGGCAAAGGCACAGCGAGACTCAATTCATGAACGAAGTGGCTACCATTGGGTGGGTCCATCACATCAATTTGGTTCGGCTGTCCGGGTATTGCTTTGAAAGCATTACAAGTGCTCTGGTATATGAGTACATGGTGAATGGATCCCTTGAGAAGTTTATAT

Ace file of the UniGene sp_v3.0_unigene185688

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor-like kinase (Fragment) n=1 Tax=Hordeum vulgare RepID=Q9SWU6_HORVU	-	-	6.0e-22	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Putative rust resistance kinase Lr10	-	-	2.309e-30	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	1.393e-06	-

Source	Gene names
Sma3	8ARK2; GSVIVT00004127001; GSVIVT00004128001; GSVIVT00004129001; GSVIVT00004243001; GSVIVT00004959001; GSVIVT00004961001; GSVIVT00004966001; GSVIVT00005131001; GSVIVT00005229001; GSVIVT00005230001; GSVIVT00005232001; GSVIVT00006441001; GSVIVT00006445001; G

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3		IPR014045	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Ribonuclease T2, active site	IPR018188	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G24080.1	Protein kinase superfamily protein chr5:8139334-8141014 REVERSE LENGTH=470	1.0e-20	55%
RefSeq	Arabidopsis thaliana	NP_568438.1	protein kinase family protein [Arabidopsis thaliana]	1.0e-20	55%
RefSeq	Populus trichocarpa	XP_002333072.1	predicted protein, partial [Populus trichocarpa]	2.0e-27	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL62

Fln msg: Distance to subject end: 228 aas, your sequence is shorter than subject: 110 - 443

Fln protein: VEKFLKQYAYEMPTRYTYSQLKKITNNFEEKLGEGGYGVVYKGKLPNGALVAVKILDRQRHSETQFMNEVATIGWVHHINLVRLSGYCFESITSALVYEYMVNGSLEKFI

Protein Length: 111

Fln nts: TGTTGAGAAATTCCTAAAGCAATATGCTTATGAAATGCCAACCAGATATACATACTCTCAACTCAAGAAGATCACAAACAACTTTGAAGAAAAGTTGGGAGAAGGAGGTTATGGTGTGGTGTATAAAGGAAAGCTTCCGAACGGAGCCCTAGTGGCTGTTAAGATTCTGGACAGGCAAAGGCACAGCGAGACTCAATTCATGAACGAAGTGGCTACCATTGGGTGGGTCCATCACATCAATTTGGTTCGGCTGTCCGGGTATTGCTTTGAAAGCATTACAAGTGCTCTGGTATATGAGTACATGGTGAATGGATCCCTTGAGAAGTTTATAT

Fln Alignment:

AllPine_b_c13793___RYTYSQLKKITNNFXXXXXXXXXXXXXXXXXPNGALVAVKIL-DRQRHSETQFMNEVATIGWVHHINLVRLSGYCFESITSALVYEYMVNGSL
B8LL62________________RYSYKDLQKATHNFTTVIGQGAFGPVYKAMMPTGETVAVKVLATNSSQGEREFQTEVMLLGRLHHRNLVNLVGYCVDKGERMLVYEFMSNGSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain