SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene185681

Length: 394 nt

UniGene Fasta

>sp_v3.0_unigene185681
TAGATCAGGCCCATATCTGAAAAGGTCGGATACACACAGTCCCTTAAGAATCCGTCCCATTTCAGCCCAGAACCAAGATATCCATCTAGCCAAAAGGAGATGTGATTACTATGATTTATATGATGAACTCGTACCATACAAGGATGCTTGGTCTTGGCAAAAACAAATGGTGGAAACTAAGCATGCCCTGTTGGAAGCAGATAAAGATGAATGCGACTCTGTAGTGGTTCTTCAGCATCCTCCTGTTTATACCTTGGGCACTCGGAGCTCGGAGAAGTTTCTGCTCTTTGACCTACATGATTCTCCAATTGATATATATCGAACTGAACGTGGTGGTGAAGTGACATATCATGGCCCTGGTCAGATGCATTGGAGTTGCAGCTCGTGATGTACC

Ace file of the UniGene sp_v3.0_unigene185681

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Plastidial lipoyltransferase 2 n=2 Tax=Arabidopsis RepID=LIP2P_ARATH	-	-	6.0e-31	55%
FL-Next	sp=Plastidial lipoyltransferase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%

Source	ECs	Term	Type	e value	Identity
Sma3	Transferases, Acyltransferases, Transferring groups other than amino-acyl groups.	EC:2.3.1.-	-	4.253e-06	-

Source	KEGGs	Term	e value	Identity
Sma3	Fatty acid biosynthesis	00061	4.253e-06	%
Sma3	Tetracycline biosynthesis	00253	4.253e-06	%
Sma3	Lysine degradation	00310	4.253e-06	%
Sma3	Arginine and proline metabolism	00330	4.253e-06	%
Sma3	Histidine metabolism	00340	4.253e-06	%
Sma3	Tyrosine metabolism	00350	4.253e-06	%
Sma3	Benzoate degradation	00362	4.253e-06	%
Sma3	Lipopolysaccharide biosynthesis	00540	4.253e-06	%
Sma3	Glycerophospholipid metabolism	00564	4.253e-06	%
Sma3	Ether lipid metabolism	00565	4.253e-06	%
Sma3	Glycosphingolipid biosynthesis - ganglio series	00604	4.253e-06	%
Sma3	Toluene degradation	00623	4.253e-06	%
Sma3	Naphthalene degradation	00626	4.253e-06	%
Sma3	Aminobenzoate degradation	00627	4.253e-06	%
Sma3	Ethylbenzene degradation	00642	4.253e-06	%
Sma3	Butanoate metabolism	00650	4.253e-06	%
Sma3	Methane metabolism	00680	4.253e-06	%
Sma3	Limonene and pinene degradation	00903	4.253e-06	%
Sma3	Diterpenoid biosynthesis	00904	4.253e-06	%
Sma3	Carotenoid biosynthesis	00906	4.253e-06	%
Sma3	Anthocyanin biosynthesis	00942	4.253e-06	%
Sma3	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	4.253e-06	%
Sma3	Isoquinoline alkaloid biosynthesis	00950	4.253e-06	%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	4.253e-06	%
Sma3	Betalain biosynthesis	00965	4.253e-06	%
Sma3	Biosynthesis of unsaturated fatty acids	01040	4.253e-06	%
Sma3	Biosynthesis of type II polyketide backbone	01056	4.253e-06	%
Sma3	Biosynthesis of terpenoids and steroids	01062	4.253e-06	%
Sma3	Metabolic pathways	01100	4.253e-06	%
Sma3	Biosynthesis of secondary metabolites	01110	4.253e-06	%

Source	Gene names
Sma3	AT4g31050; At1g47575; At4g31050; CHLREDRAFT_50452; F16N3.14; F6I18.40; LIP2p; PHYPADRAFT_17195; POPTRDRAFT_1072058; RCOM_0251400;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3		GO:0008415	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-
Sma3	lipoate biosynthetic process	GO:0009107	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Octanoyltransferase	IPR000544	-	0.0	-
Sma3	Biotin/lipoate A/B protein ligase	IPR004143	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G31050.1	Biotin/lipoate A/B protein ligase family chr4:15114345-15115443 FORWARD LENGTH=278	1.0e-39	55%
RefSeq	Arabidopsis thaliana	NP_567866.1	Plastidial lipoyltransferase 2 [Arabidopsis thaliana]	1.0e-39	55%
RefSeq	Populus trichocarpa	XP_002302455.1	predicted protein [Populus trichocarpa]	1.0e-33	54%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q948J9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 136 aas, atg_distance in limit (1-15): atg_distance = 12, W2: There is no M at the beginning, your sequence is shorter than subject: 129 - 278

Fln protein: RSGPYLKRSDTHSPLRIRPISAQNQDIHLAKRRCDYYDLYDELVPYKDAWSWQKQMVETKHALLEADKDECDSVVVLQHPPVYTLGTRSSEKFLLFDLHDSPIDIYRTERGGEVTYHGPGQMHWSCSS*

Protein Length: 130

Fln nts: TAGATCAGGCCCATATCTGAAAAGGTCGGATACACACAGTCCCTTAAGAATCCGTCCCATTTCAGCCCAGAACCAAGATATCCATCTAGCCAAAAGGAGATGTGATTACTATGATTTATATGATGAACTCGTACCATACAAGGATGCTTGGTCTTGGCAAAAACAAATGGTGGAAACTAAGCATGCCCTGTTGGAAGCAGATAAAGATGAATGCGACTCTGTAGTGGTTCTTCAGCATCCTCCTGTTTATACCTTGGGCACTCGGAGCTCGGAGAAGTTTCTGCTCTTTGACCTACATGATTCTCCAATTGATATATATCGAACTGAACGTGGTGGTGAAGTGACATATCATGGCCCTGGTCAGATGCATTGGAGTTGCAGCTCGTGATGTACC

Fln Alignment:

AllPine_b_c13754___IRPISAQNQDIHLAKRRCDYYDLYDELVPYKDAWSWQKQMVETKHALLEADKDECDSVVVLQHPPVYTLGTRSSEKFLLFDLHDSPIDIYRTERGGEVTYHGPGQM
Q948J9________________VRSVKILNSGNHEIPRKCLCFDLYDKLVPYKKAWSWQKSIVEEKKTLIDRNQDCADTVILLQHSPVYTMGTASTEDYLNFDIKDAPFNVYRTERGGEVTYHGPGQL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
313			33	66	0.997464
325			33	66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain