SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene185638

Length: 474 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene185638
GAGGAGGATTCGAAGGTCAAGGTCGGCTGCCTCAGGGAGGTTGAAGTGGTCTCTGGTCTCCCTGCGGCCACGAGCACTGAGCGACTGGACATTCTGGACGAGGAGCAGCATATTCTGAGCTTCAGCATCGTGGGAGGCGAACATAGGCTCAACAATTATCGATCCATCACAACTCTGCACGAGACGATTATAAATGGAAAACCCAAAACCATTGTGATCGAATCGTACGTGGTGGATGTACCACAAGGGAATACAAAAGAGGAGGCCTGTCTATTCGTAGAGACCATCATTGAATCCAATCTTCGGTCTTTGGCTCATGTTTCCAAGCTCCTCAATGGTACCCACTCCGCTGTTTACAGTCTCGCAGACCCCAGTACCTGTTTCTGAAGATTTGTCTATTATACAGTTCGGCGAGGTTTTTTTAGACGGTGTAATTGTCTGATTTTTGAGATATTCTTGAAGTCTGTAATTGAG

Ace file of the UniGene sp_v3.0_unigene185638 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	AT-rich element binding factor 3	-	-	4.418e-16	-

Source	Gene names
Sma3	23.t00047; 40.t00062; AT4g01020; AT4g17870; AT4g18620; AT4g27920; ATF3; At1g01360; At1g73000; At2g26040; At2g38310; At2g40330; At4g01020; At4g17870; At4g18620; At4g27920; At5g05440; At5g45860; At5g45870; At5g46790; At5g53160; B1088C09.11; CAPIP1; F28A21.3

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Bet v I domain	IPR000916	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Zinc finger, C6HC-type	IPR002867	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Streptomyces cyclase/dehydrase	IPR005031	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G38310.1	PYL4, RCAR10 PYR1-like 4 chr2:16050251-16050874 FORWARD LENGTH=207	3.99931e-42	66%
RefSeq	Arabidopsis thaliana	NP_565887.1	abscisic acid receptor PYL4 [Arabidopsis thaliana]	6.00036e-42	66%
RefSeq	Populus trichocarpa	XP_002321450.1	predicted protein [Populus trichocarpa]	2.00386e-43	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQM9

Fln msg: your sequence is shorter than subject: 129 - 213

Fln protein: EEDSKVKVGCLREVEVVSGLPAATSTERLDILDEEQHILSFSIVGGEHRLNNYRSITTLHETIINGKPKTIVIESYVVDVPQGNTKEEACLFVETIIESNLRSLAHVSKLLNGTHSAVYSLADPSTCF*

Protein Length: 130

Fln nts: GAGGAGGATTCGAAGGTCAAGGTCGGCTGCCTCAGGGAGGTTGAAGTGGTCTCTGGTCTCCCTGCGGCCACGAGCACTGAGCGACTGGACATTCTGGACGAGGAGCAGCATATTCTGAGCTTCAGCATCGTGGGAGGCGAACATAGGCTCAACAATTATCGATCCATCACAACTCTGCACGAGACGATTATAAATGGAAAACCCAAAACCATTGTGATCGAATCGTACGTGGTGGATGTACCACAAGGGAATACAAAAGAGGAGGCCTGTCTATTCGTAGAGACCATCATTGAATCCAATCTTCGGTCTTTGGCTCATGTTTCCAAGCTCCTCAATGGTACCCACTCCGCTGTTTACAGTCTCGCAGACCCCAGTACCTGTTTCTGA___AGATTTGTCTATTATACAGTTCGGCGAGGTTTTTTTAGACGGTGTAATTGTCTGATTTTTGAGATATTCTTGAAGTCTGTAATTGAG

Fln Alignment:

AllPine_b_c13583___VKVGCLREVEVVSGLPAATSTERLDILDEEQHILSFSIVGGEHRLNNYRSITTLHETIINGKPKTIVIESYVVDVPQGNTKEEACLFVETIIESNLRSLAHVSKLLNGTH
A9NQM9________________LKVGCLREVRVVSGLPAATSTERLDILDEERHILSFSIVGGDHRLNNYRSITTLHETLINGKPGTIVIESYVLDVPHGNTKEETCLFVDTIVKCNLQSLAHVSNHLNSTH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain