SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene185553

Length: 468 nt

UniGene Fasta

>sp_v3.0_unigene185553
GGGTGTATGAATTCATGGTTAATGGTTCTTTGGAGAAGTATATCCATGGACACCACATGGACGAGTTAGACTGGAAACAGTTGTTTTCCATTGCAGTTGGTACAGCTCGTGGCATTGCATACCTGCATGAAGACTGCAGAAATCGCATCCTGCACTGTGATATAAAGCCCCACAATGTTCTCCTTGATGCTAATTTTTTGCCCAAAGTTGCAGATTTTGGTCTTGCCAAAATATCTGACAGAGAGGAAAGTCACATCTCTGTGGCCAATAGAGGAACACTAGGCTACGCTGCTCCAGAGATGTGGTCAAGGCTGTATGGAGTTGTCACTGATAAATCTGATGTGTATAGCTATGGTATATTACTTATGGAGATGGTGGGGCGGAAGGAAGAACATCGATTACAAGTATCTAGAAAGTAACTCAAGTAAATTCTTCTATGCAGAGTGGGCTTTTAAACAAGTGGAAAAG

Ace file of the UniGene sp_v3.0_unigene185553

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein kinase n=1 Tax=Glycine max RepID=C6ZS15_SOYBN	-	-	1.0e-38	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Putative rust resistance kinase Lr10	-	-	1.207e-36	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	9.959e-10	-

Source	Gene names
Sma3	8ARK1; 8ARK2; 8ARK3; ARK1AS; AT4g18250; AT4g32300; At1g67000; At4g32300; At5g38260; At5g38280; B1423D04.25; F10M6.60; F1O19.1; F1O19.6; F20P5.3; F8B4.10; GSVIVT00000338001; GSVIVT00004129001; GSVIVT00004959001; GSVIVT00004961001; GSVIVT00004966001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	phospholipase C activity	GO:0004629	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	glycerophosphodiester phosphodiesterase activity	GO:0008889	Molecular Function	-
Sma3	glycerol metabolic process	GO:0006071	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3		GO:0007242	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	recognition of pollen	GO:0048544	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Phospholipase C, phosphatidylinositol-specific , X domain	IPR000909	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Glycerophosphoryl diester phosphodiesterase	IPR004129	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3		IPR014045	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain	IPR017946	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Ribonuclease T2, active site	IPR018188	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G66920.2	Protein kinase superfamily protein chr1:24965410-24967432 REVERSE LENGTH=617	55%
RefSeq	Arabidopsis thaliana	NP_176864.1	protein kinase-like protein [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002321489.1	predicted protein, partial [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 170 aas, your sequence is shorter than subject: 139 - 656

Fln protein: VYEFMVNGSLEKYIHGHHMDELDWKQLFSIAVGTARGIAYLHEDCRNRILHCDIKPHNVLLDANFLPKVADFGLAKISDREESHISVANRGTLGYAAPEMWSRLYGVVTDKSDVYSYGILLMEMVGRKEEHRLQVSRK*

Protein Length: 140

Fln nts: GGGTGTATGAATTCATGGTTAATGGTTCTTTGGAGAAGTATATCCATGGACACCACATGGACGAGTTAGACTGGAAACAGTTGTTTTCCATTGCAGTTGGTACAGCTCGTGGCATTGCATACCTGCATGAAGACTGCAGAAATCGCATCCTGCACTGTGATATAAAGCCCCACAATGTTCTCCTTGATGCTAATTTTTTGCCCAAAGTTGCAGATTTTGGTCTTGCCAAAATATCTGACAGAGAGGAAAGTCACATCTCTGTGGCCAATAGAGGAACACTAGGCTACGCTGCTCCAGAGATGTGGTCAAGGCTGTATGGAGTTGTCACTGATAAATCTGATGTGTATAGCTATGGTATATTACTTATGGAGATGGTGGGGCGGAAGGAAGAACATCGATTACAAGTATCTAGAAAGTAACTCAAGTAAATTCTTCTATGCAGAGTGGGCTTTTAAACAAGTGGAAAAG

Fln Alignment:

AllPine_b_c13392___VYEFMVNGSLEKYIHGHHMDELDWKQLFSIAVGTARGIAYLHEDCRNRILHCDIKPHNVLLDANFLPKVADFGLAKISDREESHISVANRGTLGYAAPEMWSRLYGVVTDKSDVYSYGILLMEMV-GRK
C0PRI9________________VYEFVPNDTLEHHLHGKGQPNMEWPTRLKIAIGAARGLAYLHEDCYPKIIHRDIKASNILLDSNFEAKVADFGLAKLASEDFTHVSTRVMGTFGYLAPEYASS--GKLTDRSDVFSFGVMLLELITGRR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain