SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene185541

Length: 214 nt

UniGene Fasta

>sp_v3.0_unigene185541
CTGCACATGGGTTGGCTGGAATAATGCATGTCCTTCTTCATTTTCCACTAAATAAAGAAGACGCAGATGATGTCAAGGGAACATTGCTTTACATGATTAGAAAACGTTTTCCAGAGTCGGGAAACTTCCCATCAAGTGAAGGTAATACGAGGGACAAGCTTGTGCAATGGTGCCATGGTGCACCTGGTATTGCAATGTCTCTTTGCAAGGCAGC

Ace file of the UniGene sp_v3.0_unigene185541

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LANC_like domain containing protein	-	-	5.0e-22	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Catalytic, putative	-	-	3.865e-08	-

Source	Gene names
Sma3	At1g52920; At2g20770; At5g65280; F14G24.19; GCR2; GSVIVT00011263001; GSVIVT00013061001; GSVIVT00025830001; GSVIVT00027635001; LOC_Os10g35480; MQN23.23; OSIGBa0155K17.4; OSJNBa0017E08.4; OSJNBa0074L08.13; OSJNBa0081C01.1; Os10g0497900; OsI_16739; OsJ_15552

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	abscisic acid binding	GO:0010427	Molecular Function	-
Sma3	regulation of abscisic acid mediated signaling pathway	GO:0009787	Biological Process	-
Sma3	maintenance of seed dormancy	GO:0010231	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lanthionine synthetase C-like	IPR007822	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G65280.1	GCL1 GCR2-like 1 chr5:26086129-26088069 REVERSE LENGTH=433	1.0e-28	68%
RefSeq	Arabidopsis thaliana	NP_201331.1	protein GCR2-like 1 [Arabidopsis thaliana]	1.0e-28	68%
RefSeq	Populus trichocarpa	XP_002306296.1	predicted protein [Populus trichocarpa]	3.0e-29	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV23

Fln msg: Distance to subject end: 114 aas, your sequence is shorter than subject: 70 - 427

Fln protein: AHGLAGIMHVLLHFPLNKEDADDVKGTLLYMIRKRFPESGNFPSSEGNTRDKLVQWCHGAPGIAMSLCKA

Protein Length: 71

Fln nts: CTGCACATGGGTTGGCTGGAATAATGCATGTCCTTCTTCATTTTCCACTAAATAAAGAAGACGCAGATGATGTCAAGGGAACATTGCTTTACATGATTAGAAAACGTTTTCCAGAGTCGGGAAACTTCCCATCAAGTGAAGGTAATACGAGGGACAAGCTTGTGCAATGGTGCCATGGTGCACCTGGTATTGCAATGTCTCTTTGCAAGGCAGC

Fln Alignment:

AllPine_b_c13352___AHGLAGIMHVLLHFPLNKEDADDVKGTLLYMIRKRFPESGNFPSSEGNTRDKLVQWCHGAPGIAMSLCKA
A9NV23________________AHGLAGIMHVLLHFPLNKEDADDVKGTLHYMIRNRFPESGNYPSSEGNKRDKLVQWCHGAPGVAMSLCKA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
111		33		66	0.997453
123	66		33		0.997455

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain