SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene185339

Length: 493 nt

UniGene Fasta

>sp_v3.0_unigene185339
AGTCCCATTGTAAGATGCCAGGTTTTACTGGCACTACTGATCTAACAGTTCCTGCAAGTAAGGAAGAGAAAAGTAGCAGCTCTAGTCAATCACAGAATAACAGTCAAACTTGTTTGAGCAGGCATGCAAAAGCTGCTAGTCCAGTTCAGAAAGAAGATACTCAGAGTTCTGTGGTATGTTCAGTTAGTAATAAGTCCTCTTTTTCTGGTTCACCACGTAAGATTTCAAACAAAAGTGTCCAGAGTTCACTTCTATCAGGGAGCCACAAAGAATCCATGGGTGGGAAAGCACAGTTATGTAGTAGAAATACATCAGGTGAGAAAGACTCACACACTGGAAGATTATCTGACAAGGGAACAGATATTGCTCCGGGGGATATCAGTCAGAGGTTGATAGTAAGACTTCCTAACCCATCCCGAAGCCCAACTAGAAGTGTAAATTGTGGATTGAATGCAGATAAAGCAATTCCTGGGAACCAGGGGCTTTCTCCTAG

Ace file of the UniGene sp_v3.0_unigene185339

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	41%

Source	Gene names
Sma3	VITISV_002644;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA polymerase II transcription factor activity	GO:0003702	Molecular Function	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transcription elongation, DNA-dependent	GO:0006354	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	IPR003617	-	-
Sma3		IPR004253	-	-
Sma3		IPR010990	-	-
Sma3		IPR014754	-	-
Sma3	Transcription factor IIS, N-terminal	IPR017923	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5AGR1

Fln msg: Distance to subject end: 1311 aas, your sequence is shorter than subject: 163 - 1961

Fln protein: SHCKMPGFTGTTDLTVPASKEEKSSSSSQSQNNSQTCLSRHAKAASPVQKEDTQSSVVCSVSNKSSFSGSPRKISNKSVQSSLLSGSHKESMGGKAQLCSRNTSGEKDSHTGRLSDKGTDIAPGDISQRLIVRLPNPSRSPTRSVNCGLNADKAIPGNQGLSP

Protein Length: 164

Fln nts: AGTCCCATTGTAAGATGCCAGGTTTTACTGGCACTACTGATCTAACAGTTCCTGCAAGTAAGGAAGAGAAAAGTAGCAGCTCTAGTCAATCACAGAATAACAGTCAAACTTGTTTGAGCAGGCATGCAAAAGCTGCTAGTCCAGTTCAGAAAGAAGATACTCAGAGTTCTGTGGTATGTTCAGTTAGTAATAAGTCCTCTTTTTCTGGTTCACCACGTAAGATTTCAAACAAAAGTGTCCAGAGTTCACTTCTATCAGGGAGCCACAAAGAATCCATGGGTGGGAAAGCACAGTTATGTAGTAGAAATACATCAGGTGAGAAAGACTCACACACTGGAAGATTATCTGACAAGGGAACAGATATTGCTCCGGGGGATATCAGTCAGAGGTTGATAGTAAGACTTCCTAACCCATCCCGAAGCCCAACTAGAAGTGTAAATTGTGGATTGAATGCAGATAAAGCAATTCCTGGGAACCAGGGGCTTTCTCCTAG

Fln Alignment:

AllPine_b_c12739___QTCLSRHAKAASPVQKEDTQXXXXXXXXXXXXXXXXPRKISNKSVQSSLLSGSHKESMGGKAQLCSRNTSGEKDSHTGRLSDKGTDIAPGDI--SQRLIVRLPNPSRSPTRSVNCGLNADKAIPGNQGLSP
A5AGR1________________QSCSSDHAKAVGSSCREDARSSTAGSLSANKISSSSSRH--RKSSNGVHGSGSQKETGLGKFGSLNRSSTSEKVSPAGAMHEKVSDVPPSDHLNSQRLIVRLPNTGRSPARSASGGSFEDSAITFSRSSPP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain